Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
LINC00643Q86TS7 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC10.83□□□□□ -0.67
LINC00643Q86TS7 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 TFP1-202ENST00000475455 1573 ntBASIC10.83□□□□□ -0.68
LINC00643Q86TS7 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 RARRES2P2-201ENST00000394842 485 ntBASIC10.83□□□□□ -0.68
LINC00643Q86TS7 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 MTDHP2-201ENST00000601468 714 ntBASIC10.83□□□□□ -0.68
LINC00643Q86TS7 AC243732.1-201ENST00000612648 864 ntBASIC10.83□□□□□ -0.68
LINC00643Q86TS7 LINC01451-201ENST00000623792 534 ntBASIC10.83□□□□□ -0.68
LINC00643Q86TS7 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 BLK-205ENST00000529894 2017 ntTSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
LINC00643Q86TS7 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 SP100-208ENST00000427101 1922 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 LINC00528-201ENST00000600723 2160 ntBASIC10.82□□□□□ -0.68
LINC00643Q86TS7 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
LINC00643Q86TS7 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms