Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.12■□□□□ 0.33
PKNOX1P55347 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
PKNOX1P55347 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
PKNOX1P55347 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
PKNOX1P55347 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PKNOX1P55347 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.12■□□□□ 0.33
PKNOX1P55347 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PKNOX1P55347 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
PKNOX1P55347 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PKNOX1P55347 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PKNOX1P55347 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.11■□□□□ 0.33
PKNOX1P55347 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 KRT18P38-201ENST00000449496 1282 ntBASIC17.11■□□□□ 0.33
PKNOX1P55347 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.11■□□□□ 0.33
PKNOX1P55347 AC002558.1-201ENST00000488906 803 ntBASIC17.11■□□□□ 0.33
PKNOX1P55347 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.11■□□□□ 0.33
PKNOX1P55347 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.11■□□□□ 0.33
PKNOX1P55347 AL390719.2-201ENST00000606993 987 ntBASIC17.11■□□□□ 0.33
PKNOX1P55347 AL139327.4-201ENST00000612362 153 ntBASIC17.11■□□□□ 0.33
PKNOX1P55347 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.11■□□□□ 0.33
PKNOX1P55347 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.11■□□□□ 0.33
PKNOX1P55347 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.11■□□□□ 0.33
PKNOX1P55347 AC097374.2-201ENST00000618617 1306 ntBASIC17.11■□□□□ 0.33
PKNOX1P55347 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 AC008741.2-201ENST00000612792 3115 ntBASIC17.11■□□□□ 0.33
PKNOX1P55347 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.11■□□□□ 0.33
PKNOX1P55347 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
PKNOX1P55347 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PKNOX1P55347 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.1■□□□□ 0.33
PKNOX1P55347 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PKNOX1P55347 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
PKNOX1P55347 AC005521.1-201ENST00000393351 872 ntBASIC17.1■□□□□ 0.33
PKNOX1P55347 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.1■□□□□ 0.33
PKNOX1P55347 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.1■□□□□ 0.33
PKNOX1P55347 AC005332.3-201ENST00000589904 676 ntBASIC17.1■□□□□ 0.33
PKNOX1P55347 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.1■□□□□ 0.33
PKNOX1P55347 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PKNOX1P55347 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
PKNOX1P55347 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.1■□□□□ 0.33
PKNOX1P55347 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PKNOX1P55347 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PKNOX1P55347 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PKNOX1P55347 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PKNOX1P55347 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.09■□□□□ 0.33
PKNOX1P55347 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
PKNOX1P55347 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PKNOX1P55347 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
PKNOX1P55347 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PKNOX1P55347 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PKNOX1P55347 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.09■□□□□ 0.33
PKNOX1P55347 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PKNOX1P55347 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.09■□□□□ 0.33
PKNOX1P55347 AC112907.2-201ENST00000448639 330 ntBASIC17.09■□□□□ 0.33
PKNOX1P55347 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.09■□□□□ 0.33
PKNOX1P55347 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.09■□□□□ 0.33
PKNOX1P55347 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PKNOX1P55347 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PKNOX1P55347 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.09■□□□□ 0.33
PKNOX1P55347 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.09■□□□□ 0.33
PKNOX1P55347 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PKNOX1P55347 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
PKNOX1P55347 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.09■□□□□ 0.33
PKNOX1P55347 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms