Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.43■□□□□ 0.22
SOX3P41225 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SOX3P41225 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SOX3P41225 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.43■□□□□ 0.22
SOX3P41225 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SOX3P41225 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SOX3P41225 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SOX3P41225 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.42■□□□□ 0.22
SOX3P41225 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SOX3P41225 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SOX3P41225 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
SOX3P41225 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
SOX3P41225 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SOX3P41225 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.42■□□□□ 0.22
SOX3P41225 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SOX3P41225 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SOX3P41225 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.42■□□□□ 0.22
SOX3P41225 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.42■□□□□ 0.22
SOX3P41225 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.42■□□□□ 0.22
SOX3P41225 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
SOX3P41225 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
SOX3P41225 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.42■□□□□ 0.22
SOX3P41225 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.42■□□□□ 0.22
SOX3P41225 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.42■□□□□ 0.22
SOX3P41225 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.42■□□□□ 0.22
SOX3P41225 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.42■□□□□ 0.22
SOX3P41225 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.42■□□□□ 0.22
SOX3P41225 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SOX3P41225 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SOX3P41225 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
SOX3P41225 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SOX3P41225 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
SOX3P41225 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.42■□□□□ 0.22
SOX3P41225 AC006116.8-202ENST00000587620 1550 ntBASIC16.42■□□□□ 0.22
SOX3P41225 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.42■□□□□ 0.22
SOX3P41225 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SOX3P41225 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SOX3P41225 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
SOX3P41225 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.41■□□□□ 0.22
SOX3P41225 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.41■□□□□ 0.22
SOX3P41225 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.41■□□□□ 0.22
SOX3P41225 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.41■□□□□ 0.22
SOX3P41225 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.41■□□□□ 0.22
SOX3P41225 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.41■□□□□ 0.22
SOX3P41225 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.41■□□□□ 0.22
SOX3P41225 FAAHP1-202ENST00000446499 1238 ntBASIC16.41■□□□□ 0.22
SOX3P41225 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.41■□□□□ 0.22
SOX3P41225 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SOX3P41225 AC011467.2-201ENST00000598425 242 ntBASIC16.41■□□□□ 0.22
SOX3P41225 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.41■□□□□ 0.22
SOX3P41225 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
SOX3P41225 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.41■□□□□ 0.22
SOX3P41225 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.41■□□□□ 0.22
SOX3P41225 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SOX3P41225 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.4■□□□□ 0.22
SOX3P41225 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.4■□□□□ 0.22
SOX3P41225 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.4■□□□□ 0.22
SOX3P41225 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.4■□□□□ 0.22
SOX3P41225 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.4■□□□□ 0.22
SOX3P41225 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.4■□□□□ 0.22
SOX3P41225 AP001094.4-201ENST00000579008 2176 ntBASIC16.4■□□□□ 0.22
SOX3P41225 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SOX3P41225 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SOX3P41225 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.4■□□□□ 0.22
SOX3P41225 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 AKR1C7P-201ENST00000305623 895 ntBASIC16.4■□□□□ 0.22
SOX3P41225 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
SOX3P41225 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.4■□□□□ 0.22
SOX3P41225 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.4■□□□□ 0.22
SOX3P41225 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.4■□□□□ 0.22
SOX3P41225 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.4■□□□□ 0.22
SOX3P41225 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.4■□□□□ 0.22
SOX3P41225 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.4■□□□□ 0.22
SOX3P41225 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms