Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 KRT17P2-201ENST00000300992 1314 ntBASIC19.23■□□□□ 0.67
TPM1P09493 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TPM1P09493 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 AC063926.3-201ENST00000624734 5658 ntBASIC19.22■□□□□ 0.67
TPM1P09493 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.22■□□□□ 0.67
TPM1P09493 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.22■□□□□ 0.67
TPM1P09493 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.22■□□□□ 0.67
TPM1P09493 HMGA1P5-201ENST00000412453 271 ntBASIC19.22■□□□□ 0.67
TPM1P09493 AC005104.2-201ENST00000427818 678 ntBASIC19.22■□□□□ 0.67
TPM1P09493 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
TPM1P09493 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.22■□□□□ 0.67
TPM1P09493 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.22■□□□□ 0.67
TPM1P09493 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.22■□□□□ 0.67
TPM1P09493 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.22■□□□□ 0.67
TPM1P09493 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC19.22■□□□□ 0.67
TPM1P09493 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.22■□□□□ 0.67
TPM1P09493 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.22■□□□□ 0.67
TPM1P09493 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TPM1P09493 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM1P09493 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.21■□□□□ 0.67
TPM1P09493 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TPM1P09493 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
TPM1P09493 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
TPM1P09493 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
TPM1P09493 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TPM1P09493 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.21■□□□□ 0.67
TPM1P09493 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC19.21■□□□□ 0.67
TPM1P09493 AC060834.1-201ENST00000443027 2032 ntBASIC19.21■□□□□ 0.67
TPM1P09493 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.21■□□□□ 0.67
TPM1P09493 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 NAPSB-206ENST00000562112 1266 ntBASIC19.21■□□□□ 0.67
TPM1P09493 AC009154.2-201ENST00000621177 724 ntBASIC19.21■□□□□ 0.67
TPM1P09493 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC19.21■□□□□ 0.67
TPM1P09493 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
TPM1P09493 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
TPM1P09493 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM1P09493 AC068587.6-202ENST00000641839 5619 ntBASIC19.21■□□□□ 0.67
TPM1P09493 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 PCDHA14-201ENST00000506751 2298 ntBASIC19.2■□□□□ 0.66
TPM1P09493 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
TPM1P09493 AC008894.3-201ENST00000624324 3103 ntBASIC19.2■□□□□ 0.66
TPM1P09493 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
TPM1P09493 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM1P09493 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.2■□□□□ 0.66
TPM1P09493 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms