Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 AC009949.1-201ENST00000623048 1830 ntBASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 BX842568.4-201ENST00000421222 227 ntBASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 SIGLEC30P-201ENST00000455569 941 ntBASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 AC002558.1-201ENST00000488906 803 ntBASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 AC148477.5-201ENST00000625164 1645 ntBASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
TRAIPQ9BWF2 GNAS-203ENST00000306120 1878 ntBASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 AC138028.4-201ENST00000564984 1845 ntBASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 KLF4P1-201ENST00000412782 1185 ntBASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 KRT18P3-201ENST00000451602 1288 ntBASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 AC005593.1-201ENST00000624894 515 ntBASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 KRT18P55-202ENST00000578578 1546 ntBASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRAIPQ9BWF2 NCF1C-201ENST00000438382 1427 ntBASIC19.08■□□□□ 0.65
TRAIPQ9BWF2 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.65
TRAIPQ9BWF2 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAIPQ9BWF2 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.08■□□□□ 0.65
TRAIPQ9BWF2 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.08■□□□□ 0.65
TRAIPQ9BWF2 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TRAIPQ9BWF2 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TRAIPQ9BWF2 AC134043.2-201ENST00000624206 2238 ntBASIC19.08■□□□□ 0.65
TRAIPQ9BWF2 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
TRAIPQ9BWF2 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.08■□□□□ 0.65
TRAIPQ9BWF2 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC19.08■□□□□ 0.65
TRAIPQ9BWF2 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.08■□□□□ 0.65
TRAIPQ9BWF2 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.08■□□□□ 0.65
TRAIPQ9BWF2 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 MIR940-201ENST00000401276 94 ntBASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAIPQ9BWF2 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRAIPQ9BWF2 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
TRAIPQ9BWF2 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAIPQ9BWF2 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
TRAIPQ9BWF2 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAIPQ9BWF2 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
TRAIPQ9BWF2 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC19.07■□□□□ 0.64
TRAIPQ9BWF2 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAIPQ9BWF2 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAIPQ9BWF2 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.07■□□□□ 0.64
TRAIPQ9BWF2 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAIPQ9BWF2 FLJ13224-201ENST00000313737 1514 ntBASIC19.07■□□□□ 0.64
TRAIPQ9BWF2 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms