Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX2-2O95096 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.09■□□□□ 0.17
NKX2-2O95096 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX2-2O95096 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.09■□□□□ 0.17
NKX2-2O95096 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
NKX2-2O95096 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.09■□□□□ 0.17
NKX2-2O95096 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.09■□□□□ 0.17
NKX2-2O95096 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX2-2O95096 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX2-2O95096 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX2-2O95096 AC148477.5-201ENST00000625164 1645 ntBASIC16.08■□□□□ 0.17
NKX2-2O95096 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NKX2-2O95096 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
NKX2-2O95096 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NKX2-2O95096 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NKX2-2O95096 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NKX2-2O95096 OR6D1P-202ENST00000641007 5290 ntBASIC16.08■□□□□ 0.17
NKX2-2O95096 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
NKX2-2O95096 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NKX2-2O95096 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
NKX2-2O95096 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX2-2O95096 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
NKX2-2O95096 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
NKX2-2O95096 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX2-2O95096 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX2-2O95096 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NKX2-2O95096 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX2-2O95096 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.08■□□□□ 0.16
NKX2-2O95096 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.08■□□□□ 0.16
NKX2-2O95096 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.08■□□□□ 0.16
NKX2-2O95096 AL732292.2-201ENST00000609649 430 ntBASIC16.08■□□□□ 0.16
NKX2-2O95096 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NKX2-2O95096 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
NKX2-2O95096 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX2-2O95096 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX2-2O95096 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX2-2O95096 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
NKX2-2O95096 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX2-2O95096 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
NKX2-2O95096 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NKX2-2O95096 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX2-2O95096 LINC02012-201ENST00000608206 1725 ntBASIC16.08■□□□□ 0.16
NKX2-2O95096 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX2-2O95096 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-2O95096 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.07■□□□□ 0.16
NKX2-2O95096 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-2O95096 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.07■□□□□ 0.16
NKX2-2O95096 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-2O95096 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.07■□□□□ 0.16
NKX2-2O95096 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
NKX2-2O95096 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-2O95096 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.07■□□□□ 0.16
NKX2-2O95096 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-2O95096 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-2O95096 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.07■□□□□ 0.16
NKX2-2O95096 RBM17P3-201ENST00000417687 1192 ntBASIC16.07■□□□□ 0.16
NKX2-2O95096 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.07■□□□□ 0.16
NKX2-2O95096 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.07■□□□□ 0.16
NKX2-2O95096 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.07■□□□□ 0.16
NKX2-2O95096 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.07■□□□□ 0.16
NKX2-2O95096 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.07■□□□□ 0.16
NKX2-2O95096 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.07■□□□□ 0.16
NKX2-2O95096 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.07■□□□□ 0.16
NKX2-2O95096 PRELID1P1-202ENST00000567272 903 ntBASIC16.07■□□□□ 0.16
NKX2-2O95096 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.07■□□□□ 0.16
NKX2-2O95096 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-2O95096 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-2O95096 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
NKX2-2O95096 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-2O95096 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.07■□□□□ 0.16
NKX2-2O95096 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-2O95096 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.07■□□□□ 0.16
NKX2-2O95096 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-2O95096 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-2O95096 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-2O95096 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
NKX2-2O95096 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.06■□□□□ 0.16
NKX2-2O95096 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.06■□□□□ 0.16
NKX2-2O95096 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.06■□□□□ 0.16
NKX2-2O95096 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
NKX2-2O95096 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
NKX2-2O95096 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-2O95096 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.06■□□□□ 0.16
NKX2-2O95096 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.06■□□□□ 0.16
NKX2-2O95096 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.06■□□□□ 0.16
NKX2-2O95096 AC091304.2-201ENST00000564639 760 ntBASIC16.06■□□□□ 0.16
NKX2-2O95096 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
NKX2-2O95096 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms