Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
HOXA3O43365 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA3O43365 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.16
HOXA3O43365 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA3O43365 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
HOXA3O43365 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
HOXA3O43365 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA3O43365 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA3O43365 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA3O43365 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC14.02□□□□□ -0.16
HOXA3O43365 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
HOXA3O43365 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
HOXA3O43365 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA3O43365 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA3O43365 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA3O43365 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA3O43365 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
HOXA3O43365 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA3O43365 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA3O43365 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA3O43365 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA3O43365 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXA3O43365 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
HOXA3O43365 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 CRYGEP-201ENST00000412192 528 ntBASIC14.02□□□□□ -0.17
HOXA3O43365 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC14.02□□□□□ -0.17
HOXA3O43365 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXA3O43365 ARTN-206ENST00000472435 402 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXA3O43365 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXA3O43365 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.02□□□□□ -0.17
HOXA3O43365 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXA3O43365 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
HOXA3O43365 AC079781.4-201ENST00000641908 219 ntBASIC14.02□□□□□ -0.17
HOXA3O43365 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
HOXA3O43365 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA3O43365 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
HOXA3O43365 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
HOXA3O43365 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.02□□□□□ -0.17
HOXA3O43365 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
HOXA3O43365 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXA3O43365 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 DDX43P3-201ENST00000441064 443 ntBASIC14.01□□□□□ -0.17
HOXA3O43365 AC004967.1-201ENST00000453589 447 ntBASIC14.01□□□□□ -0.17
HOXA3O43365 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC14.01□□□□□ -0.17
HOXA3O43365 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXA3O43365 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.01□□□□□ -0.17
HOXA3O43365 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 MTDHP5-201ENST00000598980 586 ntBASIC14.01□□□□□ -0.17
HOXA3O43365 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC14.01□□□□□ -0.17
HOXA3O43365 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXA3O43365 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXA3O43365 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
HOXA3O43365 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXA3O43365 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA3O43365 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXA3O43365 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms