Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AL163051.1-201ENST00000569214 1512 ntBASIC14.09□□□□□ -0.15
HMGB3O15347 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC14.09□□□□□ -0.15
HMGB3O15347 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HMGB3O15347 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
HMGB3O15347 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
HMGB3O15347 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HMGB3O15347 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HMGB3O15347 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC14.08□□□□□ -0.15
HMGB3O15347 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HMGB3O15347 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.15
HMGB3O15347 TBC1D3P2-202ENST00000577902 1649 ntBASIC14.08□□□□□ -0.15
HMGB3O15347 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
HMGB3O15347 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
HMGB3O15347 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC14.08□□□□□ -0.16
HMGB3O15347 AC004951.3-201ENST00000418645 1148 ntBASIC14.08□□□□□ -0.16
HMGB3O15347 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC14.08□□□□□ -0.16
HMGB3O15347 TSPY6P-201ENST00000448518 926 ntBASIC14.08□□□□□ -0.16
HMGB3O15347 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC14.08□□□□□ -0.16
HMGB3O15347 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC14.08□□□□□ -0.16
HMGB3O15347 CKBP1-201ENST00000565489 1086 ntBASIC14.08□□□□□ -0.16
HMGB3O15347 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC14.08□□□□□ -0.16
HMGB3O15347 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC14.08□□□□□ -0.16
HMGB3O15347 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
HMGB3O15347 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC14.08□□□□□ -0.16
HMGB3O15347 IKBKGP1-201ENST00000612193 1073 ntBASIC14.08□□□□□ -0.16
HMGB3O15347 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC14.08□□□□□ -0.16
HMGB3O15347 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
HMGB3O15347 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
HMGB3O15347 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
HMGB3O15347 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.08□□□□□ -0.16
HMGB3O15347 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC14.08□□□□□ -0.16
HMGB3O15347 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.08□□□□□ -0.16
HMGB3O15347 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.08□□□□□ -0.16
HMGB3O15347 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
HMGB3O15347 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.08□□□□□ -0.16
HMGB3O15347 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HMGB3O15347 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.08□□□□□ -0.16
HMGB3O15347 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC14.07□□□□□ -0.16
HMGB3O15347 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 GPAT2P1-201ENST00000444924 1672 ntBASIC14.07□□□□□ -0.16
HMGB3O15347 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 LINC00554-201ENST00000564841 3011 ntBASIC14.07□□□□□ -0.16
HMGB3O15347 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.07□□□□□ -0.16
HMGB3O15347 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC14.07□□□□□ -0.16
HMGB3O15347 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 AKAP13-201ENST00000361243 9468 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.07□□□□□ -0.16
HMGB3O15347 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC14.07□□□□□ -0.16
HMGB3O15347 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 MIR149-201ENST00000384879 89 ntBASIC14.07□□□□□ -0.16
HMGB3O15347 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC14.07□□□□□ -0.16
HMGB3O15347 AL023284.2-201ENST00000405850 579 ntBASIC14.07□□□□□ -0.16
HMGB3O15347 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC14.07□□□□□ -0.16
HMGB3O15347 MCCD1P1-208ENST00000445732 328 ntBASIC14.07□□□□□ -0.16
HMGB3O15347 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
HMGB3O15347 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC14.07□□□□□ -0.16
HMGB3O15347 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC14.07□□□□□ -0.16
HMGB3O15347 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC14.07□□□□□ -0.16
HMGB3O15347 TK2-208ENST00000545043 1120 ntTSL 2 BASIC14.07□□□□□ -0.16
HMGB3O15347 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
HMGB3O15347 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC14.07□□□□□ -0.16
HMGB3O15347 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
HMGB3O15347 WT1-209ENST00000530998 2421 ntTSL 2 BASIC14.07□□□□□ -0.16
HMGB3O15347 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
HMGB3O15347 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.07□□□□□ -0.16
HMGB3O15347 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HMGB3O15347 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms