Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NR1H4Q96RI1 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NR1H4Q96RI1 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NR1H4Q96RI1 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NR1H4Q96RI1 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NR1H4Q96RI1 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 MAP2K4P1-201ENST00000438453 1195 ntBASIC16.46■□□□□ 0.23
NR1H4Q96RI1 GUSBP6-202ENST00000438529 1198 ntBASIC16.46■□□□□ 0.23
NR1H4Q96RI1 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 PNN-205ENST00000556530 601 ntTSL 2 BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 AC063926.3-201ENST00000624734 5658 ntBASIC16.46■□□□□ 0.23
NR1H4Q96RI1 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.46■□□□□ 0.23
NR1H4Q96RI1 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.46■□□□□ 0.22
NR1H4Q96RI1 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
NR1H4Q96RI1 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 KRT8P11-201ENST00000409686 1436 ntBASIC16.45■□□□□ 0.22
NR1H4Q96RI1 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 GLRB-205ENST00000512619 728 ntTSL 3 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 RGMA-211ENST00000557420 989 ntTSL 3 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 AC126755.1-201ENST00000525846 6405 ntBASIC16.45■□□□□ 0.22
NR1H4Q96RI1 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
NR1H4Q96RI1 LINC02012-201ENST00000608206 1725 ntBASIC16.45■□□□□ 0.22
NR1H4Q96RI1 KRT8P9-201ENST00000558927 1449 ntBASIC16.45■□□□□ 0.22
NR1H4Q96RI1 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 TK2-208ENST00000545043 1120 ntTSL 2 BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
NR1H4Q96RI1 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms