Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS33AQ96AX1 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS33AQ96AX1 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
VPS33AQ96AX1 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VPS33AQ96AX1 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS33AQ96AX1 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS33AQ96AX1 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS33AQ96AX1 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS33AQ96AX1 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS33AQ96AX1 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS33AQ96AX1 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 AL391807.1-203ENST00000604392 2365 ntBASIC16.81■□□□□ 0.28
VPS33AQ96AX1 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.81■□□□□ 0.28
VPS33AQ96AX1 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 AC034232.1-201ENST00000506026 1064 ntBASIC16.81■□□□□ 0.28
VPS33AQ96AX1 AC112698.1-201ENST00000510299 916 ntBASIC16.81■□□□□ 0.28
VPS33AQ96AX1 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 AC009154.2-201ENST00000621177 724 ntBASIC16.81■□□□□ 0.28
VPS33AQ96AX1 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS33AQ96AX1 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 RASA4DP-201ENST00000460726 1199 ntBASIC16.8■□□□□ 0.28
VPS33AQ96AX1 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 AL023973.1-201ENST00000624619 620 ntBASIC16.8■□□□□ 0.28
VPS33AQ96AX1 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 AC116353.5-201ENST00000638148 1699 ntBASIC16.8■□□□□ 0.28
VPS33AQ96AX1 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 AC005915.1-201ENST00000624912 2018 ntBASIC16.8■□□□□ 0.28
VPS33AQ96AX1 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
VPS33AQ96AX1 LINC01311-201ENST00000565162 1445 ntBASIC16.79■□□□□ 0.28
VPS33AQ96AX1 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS33AQ96AX1 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS33AQ96AX1 LINC01568-207ENST00000641790 1380 ntBASIC16.79■□□□□ 0.28
VPS33AQ96AX1 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS33AQ96AX1 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS33AQ96AX1 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS33AQ96AX1 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS33AQ96AX1 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
VPS33AQ96AX1 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS33AQ96AX1 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS33AQ96AX1 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS33AQ96AX1 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS33AQ96AX1 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms