Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.18■□□□□ 0.18
RNF4P78317 AC025062.2-201ENST00000605477 670 ntBASIC16.18■□□□□ 0.18
RNF4P78317 AL139327.4-201ENST00000612362 153 ntBASIC16.18■□□□□ 0.18
RNF4P78317 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.18■□□□□ 0.18
RNF4P78317 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RNF4P78317 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.18■□□□□ 0.18
RNF4P78317 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.18■□□□□ 0.18
RNF4P78317 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.18■□□□□ 0.18
RNF4P78317 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
RNF4P78317 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
RNF4P78317 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
RNF4P78317 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
RNF4P78317 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
RNF4P78317 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
RNF4P78317 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.17■□□□□ 0.18
RNF4P78317 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF4P78317 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.17■□□□□ 0.18
RNF4P78317 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.17■□□□□ 0.18
RNF4P78317 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.17■□□□□ 0.18
RNF4P78317 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.17■□□□□ 0.18
RNF4P78317 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.17■□□□□ 0.18
RNF4P78317 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
RNF4P78317 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.17■□□□□ 0.18
RNF4P78317 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.17■□□□□ 0.18
RNF4P78317 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.17■□□□□ 0.18
RNF4P78317 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.17■□□□□ 0.18
RNF4P78317 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.17■□□□□ 0.18
RNF4P78317 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF4P78317 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF4P78317 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF4P78317 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.17■□□□□ 0.18
RNF4P78317 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
RNF4P78317 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF4P78317 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF4P78317 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF4P78317 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF4P78317 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.16■□□□□ 0.18
RNF4P78317 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
RNF4P78317 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF4P78317 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 RPS2P28-201ENST00000314255 741 ntBASIC16.16■□□□□ 0.18
RNF4P78317 AL031284.1-201ENST00000419297 478 ntBASIC16.16■□□□□ 0.18
RNF4P78317 RPS2P1-201ENST00000434010 821 ntBASIC16.16■□□□□ 0.18
RNF4P78317 HNRNPDP1-201ENST00000439535 754 ntBASIC16.16■□□□□ 0.18
RNF4P78317 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF4P78317 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF4P78317 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.16■□□□□ 0.18
RNF4P78317 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF4P78317 AP001005.1-201ENST00000571755 1248 ntBASIC16.16■□□□□ 0.18
RNF4P78317 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF4P78317 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF4P78317 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.16■□□□□ 0.18
RNF4P78317 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.16■□□□□ 0.18
RNF4P78317 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF4P78317 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
RNF4P78317 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.16■□□□□ 0.18
RNF4P78317 HLA-A-201ENST00000376802 1334 ntBASIC16.16■□□□□ 0.18
RNF4P78317 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF4P78317 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF4P78317 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms