Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.23■□□□□ 0.35
LIMK1P53667 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LIMK1P53667 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.22■□□□□ 0.35
LIMK1P53667 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMK1P53667 AC139713.2-201ENST00000641328 2723 ntBASIC17.22■□□□□ 0.35
LIMK1P53667 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMK1P53667 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
LIMK1P53667 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LIMK1P53667 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.22■□□□□ 0.35
LIMK1P53667 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMK1P53667 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LIMK1P53667 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.22■□□□□ 0.35
LIMK1P53667 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMK1P53667 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMK1P53667 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.22■□□□□ 0.35
LIMK1P53667 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.22■□□□□ 0.35
LIMK1P53667 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMK1P53667 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.22■□□□□ 0.35
LIMK1P53667 GAPDHP21-201ENST00000450301 1010 ntBASIC17.22■□□□□ 0.35
LIMK1P53667 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMK1P53667 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIMK1P53667 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.22■□□□□ 0.35
LIMK1P53667 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.22■□□□□ 0.35
LIMK1P53667 AL805961.1-202ENST00000641562 540 ntBASIC17.22■□□□□ 0.35
LIMK1P53667 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMK1P53667 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
LIMK1P53667 MYLKP1-201ENST00000509077 1580 ntBASIC17.22■□□□□ 0.35
LIMK1P53667 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMK1P53667 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.22■□□□□ 0.35
LIMK1P53667 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIMK1P53667 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
LIMK1P53667 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.21■□□□□ 0.35
LIMK1P53667 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIMK1P53667 ABALON-201ENST00000629058 1903 ntBASIC17.21■□□□□ 0.35
LIMK1P53667 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMK1P53667 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LIMK1P53667 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
LIMK1P53667 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMK1P53667 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
LIMK1P53667 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMK1P53667 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMK1P53667 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMK1P53667 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMK1P53667 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMK1P53667 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.21■□□□□ 0.35
LIMK1P53667 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
LIMK1P53667 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.21■□□□□ 0.35
LIMK1P53667 TERF1P3-201ENST00000505638 1227 ntBASIC17.21■□□□□ 0.35
LIMK1P53667 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.21■□□□□ 0.35
LIMK1P53667 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.21■□□□□ 0.35
LIMK1P53667 REXO1L3P-201ENST00000622202 1288 ntBASIC17.21■□□□□ 0.35
LIMK1P53667 AC092902.6-201ENST00000641783 218 ntBASIC17.21■□□□□ 0.35
LIMK1P53667 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
LIMK1P53667 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
LIMK1P53667 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
LIMK1P53667 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
LIMK1P53667 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.21■□□□□ 0.34
LIMK1P53667 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMK1P53667 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMK1P53667 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
LIMK1P53667 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMK1P53667 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMK1P53667 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
LIMK1P53667 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
LIMK1P53667 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMK1P53667 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMK1P53667 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMK1P53667 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMK1P53667 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIMK1P53667 INGX-202ENST00000489074 768 ntBASIC17.2■□□□□ 0.34
LIMK1P53667 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMK1P53667 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.2■□□□□ 0.34
LIMK1P53667 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIMK1P53667 AC022145.2-201ENST00000598203 171 ntBASIC17.2■□□□□ 0.34
LIMK1P53667 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.2■□□□□ 0.34
LIMK1P53667 AL390955.2-201ENST00000603032 514 ntBASIC17.2■□□□□ 0.34
LIMK1P53667 AC023141.13-201ENST00000604991 943 ntBASIC17.2■□□□□ 0.34
LIMK1P53667 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMK1P53667 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMK1P53667 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMK1P53667 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIMK1P53667 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMK1P53667 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMK1P53667 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMK1P53667 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMK1P53667 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMK1P53667 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.2■□□□□ 0.34
LIMK1P53667 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.2■□□□□ 0.34
LIMK1P53667 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMK1P53667 AC025580.3-201ENST00000617932 1424 ntBASIC17.2■□□□□ 0.34
LIMK1P53667 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
LIMK1P53667 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIMK1P53667 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMK1P53667 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.2■□□□□ 0.34
LIMK1P53667 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.2■□□□□ 0.34
LIMK1P53667 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIMK1P53667 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms