Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX2P48431 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX2P48431 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX2P48431 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX2P48431 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX2P48431 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.42■□□□□ 0.06
SOX2P48431 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
SOX2P48431 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SOX2P48431 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX2P48431 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
SOX2P48431 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX2P48431 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX2P48431 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX2P48431 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC15.41■□□□□ 0.06
SOX2P48431 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC15.41■□□□□ 0.06
SOX2P48431 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC15.41■□□□□ 0.06
SOX2P48431 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC15.41■□□□□ 0.06
SOX2P48431 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC15.41■□□□□ 0.06
SOX2P48431 NAPSB-206ENST00000562112 1266 ntBASIC15.41■□□□□ 0.06
SOX2P48431 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC15.41■□□□□ 0.06
SOX2P48431 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC15.41■□□□□ 0.06
SOX2P48431 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX2P48431 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 AC105020.1-201ENST00000435356 2205 ntBASIC15.41■□□□□ 0.06
SOX2P48431 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX2P48431 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SOX2P48431 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX2P48431 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX2P48431 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
SOX2P48431 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SOX2P48431 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.4■□□□□ 0.06
SOX2P48431 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.4■□□□□ 0.06
SOX2P48431 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
SOX2P48431 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SOX2P48431 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 HES2-202ENST00000377836 507 ntTSL 2 BASIC15.4■□□□□ 0.06
SOX2P48431 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
SOX2P48431 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC15.4■□□□□ 0.06
SOX2P48431 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC15.4■□□□□ 0.06
SOX2P48431 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
SOX2P48431 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC15.4■□□□□ 0.06
SOX2P48431 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC15.4■□□□□ 0.06
SOX2P48431 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 TK1-205ENST00000590862 642 ntTSL 3 BASIC15.4■□□□□ 0.06
SOX2P48431 AC024563.2-201ENST00000603282 481 ntBASIC15.4■□□□□ 0.06
SOX2P48431 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC15.4■□□□□ 0.06
SOX2P48431 FAM87A-204ENST00000613235 858 ntBASIC15.4■□□□□ 0.06
SOX2P48431 SNX21-213ENST00000614929 587 ntTSL 5 BASIC15.4■□□□□ 0.06
SOX2P48431 AC010947.1-201ENST00000623454 693 ntBASIC15.4■□□□□ 0.06
SOX2P48431 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 AC016396.2-201ENST00000562575 1417 ntBASIC15.4■□□□□ 0.06
SOX2P48431 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SOX2P48431 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.4■□□□□ 0.06
SOX2P48431 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SOX2P48431 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 KRT17P2-201ENST00000300992 1314 ntBASIC15.4■□□□□ 0.06
SOX2P48431 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SOX2P48431 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SOX2P48431 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
SOX2P48431 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
SOX2P48431 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SOX2P48431 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms