Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
LMX1AQ8TE12 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17■□□□□ 0.31
LMX1AQ8TE12 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 AC138028.4-201ENST00000564984 1845 ntBASIC16.99■□□□□ 0.31
LMX1AQ8TE12 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 AP002414.1-201ENST00000391405 1147 ntBASIC16.99■□□□□ 0.31
LMX1AQ8TE12 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 AC010654.1-201ENST00000615722 808 ntBASIC16.99■□□□□ 0.31
LMX1AQ8TE12 GGTLC5P-201ENST00000617623 998 ntBASIC16.99■□□□□ 0.31
LMX1AQ8TE12 AL513190.1-201ENST00000621254 727 ntBASIC16.99■□□□□ 0.31
LMX1AQ8TE12 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1AQ8TE12 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.98■□□□□ 0.31
LMX1AQ8TE12 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 AC005829.1-201ENST00000570002 483 ntBASIC16.98■□□□□ 0.31
LMX1AQ8TE12 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 PI4KAP1-204ENST00000612579 1703 ntBASIC16.98■□□□□ 0.31
LMX1AQ8TE12 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 PKD1P1-201ENST00000458669 6805 ntBASIC16.98■□□□□ 0.31
LMX1AQ8TE12 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.98■□□□□ 0.31
LMX1AQ8TE12 OR6D1P-202ENST00000641007 5290 ntBASIC16.98■□□□□ 0.31
LMX1AQ8TE12 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms