Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 GPR89P-201ENST00000407924 1495 ntBASIC21.76■■□□□ 1.07
UBE3BQ7Z3V4 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC21.76■■□□□ 1.07
UBE3BQ7Z3V4 AC007613.1-201ENST00000572811 2597 ntBASIC21.76■■□□□ 1.07
UBE3BQ7Z3V4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.76■■□□□ 1.07
UBE3BQ7Z3V4 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UBE3BQ7Z3V4 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 ACTG1P4-201ENST00000425123 1122 ntBASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 RNA5SP416-201ENST00000516838 111 ntBASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBE3BQ7Z3V4 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 BEX3-201ENST00000361298 921 ntTSL 2 BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 IMP4-203ENST00000409935 958 ntTSL 5 BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 KRT18P2-201ENST00000447938 1258 ntBASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 MIR4751-201ENST00000578027 74 ntBASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 AC004790.2-201ENST00000623588 572 ntBASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 LYSMD4-203ENST00000378904 2122 ntBASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBE3BQ7Z3V4 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 TCAP-202ENST00000578283 583 ntTSL 5 BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 AC139530.3-201ENST00000620344 690 ntBASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC21.73■■□□□ 1.07
UBE3BQ7Z3V4 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBE3BQ7Z3V4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms