Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CDH6P55285 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH6P55285 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDH6P55285 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.22■□□□□ 0.51
CDH6P55285 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CDH6P55285 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH6P55285 DRAXINP1-201ENST00000437611 948 ntBASIC18.22■□□□□ 0.51
CDH6P55285 TOB2P1-201ENST00000469761 992 ntBASIC18.22■□□□□ 0.51
CDH6P55285 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDH6P55285 IGHV3-52-201ENST00000519770 353 ntBASIC18.22■□□□□ 0.51
CDH6P55285 AC009533.2-201ENST00000543664 586 ntBASIC18.22■□□□□ 0.51
CDH6P55285 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.22■□□□□ 0.51
CDH6P55285 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDH6P55285 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.22■□□□□ 0.51
CDH6P55285 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDH6P55285 AP001094.4-201ENST00000579008 2176 ntBASIC18.22■□□□□ 0.51
CDH6P55285 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.22■□□□□ 0.51
CDH6P55285 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.22■□□□□ 0.51
CDH6P55285 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH6P55285 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH6P55285 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH6P55285 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH6P55285 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDH6P55285 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH6P55285 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH6P55285 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH6P55285 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CDH6P55285 LINC00265-3P-201ENST00000447588 903 ntBASIC18.21■□□□□ 0.51
CDH6P55285 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.21■□□□□ 0.51
CDH6P55285 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.21■□□□□ 0.51
CDH6P55285 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.21■□□□□ 0.51
CDH6P55285 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.21■□□□□ 0.51
CDH6P55285 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
CDH6P55285 Z69720.1-201ENST00000601483 472 ntBASIC18.21■□□□□ 0.51
CDH6P55285 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.21■□□□□ 0.51
CDH6P55285 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.21■□□□□ 0.51
CDH6P55285 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.21■□□□□ 0.51
CDH6P55285 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CDH6P55285 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDH6P55285 AC016396.2-201ENST00000562575 1417 ntBASIC18.21■□□□□ 0.51
CDH6P55285 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH6P55285 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH6P55285 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
CDH6P55285 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDH6P55285 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDH6P55285 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDH6P55285 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.2■□□□□ 0.5
CDH6P55285 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.2■□□□□ 0.5
CDH6P55285 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.2■□□□□ 0.5
CDH6P55285 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.2■□□□□ 0.5
CDH6P55285 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.2■□□□□ 0.5
CDH6P55285 MYCLP1-201ENST00000372451 1075 ntBASIC18.2■□□□□ 0.5
CDH6P55285 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CDH6P55285 AC103564.2-201ENST00000432853 1299 ntBASIC18.2■□□□□ 0.5
CDH6P55285 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.2■□□□□ 0.5
CDH6P55285 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.2■□□□□ 0.5
CDH6P55285 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.2■□□□□ 0.5
CDH6P55285 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.2■□□□□ 0.5
CDH6P55285 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.2■□□□□ 0.5
CDH6P55285 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CDH6P55285 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
CDH6P55285 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.2■□□□□ 0.5
CDH6P55285 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.2■□□□□ 0.5
CDH6P55285 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
CDH6P55285 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CDH6P55285 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.2■□□□□ 0.5
CDH6P55285 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.2■□□□□ 0.5
CDH6P55285 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDH6P55285 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CDH6P55285 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.19■□□□□ 0.5
CDH6P55285 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.19■□□□□ 0.5
CDH6P55285 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
CDH6P55285 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
CDH6P55285 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CDH6P55285 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.19■□□□□ 0.5
CDH6P55285 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms