Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS2P54868 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
HMGCS2P54868 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS2P54868 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGCS2P54868 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
HMGCS2P54868 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
HMGCS2P54868 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS2P54868 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS2P54868 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS2P54868 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGCS2P54868 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS2P54868 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS2P54868 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS2P54868 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGCS2P54868 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS2P54868 FAM8A3P-201ENST00000427218 844 ntBASIC20.07■□□□□ 0.8
HMGCS2P54868 WDR53-203ENST00000429115 683 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGCS2P54868 PAWRP1-201ENST00000451083 565 ntBASIC20.07■□□□□ 0.8
HMGCS2P54868 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGCS2P54868 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS2P54868 AC090164.3-201ENST00000610780 2143 ntBASIC20.07■□□□□ 0.8
HMGCS2P54868 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC20.07■□□□□ 0.8
HMGCS2P54868 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS2P54868 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS2P54868 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGCS2P54868 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
HMGCS2P54868 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGCS2P54868 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS2P54868 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGCS2P54868 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
HMGCS2P54868 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGCS2P54868 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS2P54868 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGCS2P54868 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
HMGCS2P54868 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.06■□□□□ 0.8
HMGCS2P54868 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
HMGCS2P54868 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC20.06■□□□□ 0.8
HMGCS2P54868 BX323043.1-201ENST00000641006 1765 ntBASIC20.06■□□□□ 0.8
HMGCS2P54868 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.06■□□□□ 0.8
HMGCS2P54868 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.06■□□□□ 0.8
HMGCS2P54868 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
HMGCS2P54868 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.06■□□□□ 0.8
HMGCS2P54868 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 SLC25A6P2-201ENST00000497974 877 ntBASIC20.06■□□□□ 0.8
HMGCS2P54868 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.06■□□□□ 0.8
HMGCS2P54868 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC20.06■□□□□ 0.8
HMGCS2P54868 AC092364.2-202ENST00000597012 1073 ntBASIC20.06■□□□□ 0.8
HMGCS2P54868 AC022145.2-201ENST00000598203 171 ntBASIC20.06■□□□□ 0.8
HMGCS2P54868 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS2P54868 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC20.06■□□□□ 0.8
HMGCS2P54868 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
HMGCS2P54868 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGCS2P54868 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HMGCS2P54868 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
HMGCS2P54868 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGCS2P54868 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGCS2P54868 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGCS2P54868 AC104581.1-202ENST00000635932 2618 ntBASIC20.05■□□□□ 0.8
HMGCS2P54868 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HMGCS2P54868 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC20.05■□□□□ 0.8
HMGCS2P54868 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC20.05■□□□□ 0.8
HMGCS2P54868 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC20.05■□□□□ 0.8
HMGCS2P54868 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC20.05■□□□□ 0.8
HMGCS2P54868 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC20.05■□□□□ 0.8
HMGCS2P54868 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC20.05■□□□□ 0.8
HMGCS2P54868 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC20.05■□□□□ 0.8
HMGCS2P54868 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HMGCS2P54868 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.05■□□□□ 0.8
HMGCS2P54868 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HMGCS2P54868 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.05■□□□□ 0.8
HMGCS2P54868 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HMGCS2P54868 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC20.05■□□□□ 0.8
HMGCS2P54868 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HMGCS2P54868 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HMGCS2P54868 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGCS2P54868 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGCS2P54868 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HMGCS2P54868 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HMGCS2P54868 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HMGCS2P54868 CYP51A1P2-201ENST00000419457 1499 ntBASIC20.05■□□□□ 0.8
HMGCS2P54868 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGCS2P54868 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGCS2P54868 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.04■□□□□ 0.8
HMGCS2P54868 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGCS2P54868 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGCS2P54868 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGCS2P54868 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms