Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CLCN3P51790 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN3P51790 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC19.18■□□□□ 0.66
CLCN3P51790 KRT18P2-201ENST00000447938 1258 ntBASIC19.18■□□□□ 0.66
CLCN3P51790 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.18■□□□□ 0.66
CLCN3P51790 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC19.18■□□□□ 0.66
CLCN3P51790 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.18■□□□□ 0.66
CLCN3P51790 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN3P51790 AL139327.4-201ENST00000612362 153 ntBASIC19.18■□□□□ 0.66
CLCN3P51790 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC19.18■□□□□ 0.66
CLCN3P51790 AC004790.2-201ENST00000623588 572 ntBASIC19.18■□□□□ 0.66
CLCN3P51790 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.18■□□□□ 0.66
CLCN3P51790 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN3P51790 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN3P51790 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN3P51790 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.18■□□□□ 0.66
CLCN3P51790 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CLCN3P51790 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN3P51790 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CLCN3P51790 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN3P51790 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN3P51790 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN3P51790 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CLCN3P51790 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.17■□□□□ 0.66
CLCN3P51790 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.17■□□□□ 0.66
CLCN3P51790 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CLCN3P51790 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.17■□□□□ 0.66
CLCN3P51790 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.17■□□□□ 0.66
CLCN3P51790 AC023274.1-201ENST00000418278 595 ntBASIC19.17■□□□□ 0.66
CLCN3P51790 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CLCN3P51790 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.17■□□□□ 0.66
CLCN3P51790 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC19.17■□□□□ 0.66
CLCN3P51790 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.17■□□□□ 0.66
CLCN3P51790 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.17■□□□□ 0.66
CLCN3P51790 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.17■□□□□ 0.66
CLCN3P51790 LINC01451-201ENST00000623792 534 ntBASIC19.17■□□□□ 0.66
CLCN3P51790 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CLCN3P51790 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CLCN3P51790 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.17■□□□□ 0.66
CLCN3P51790 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLCN3P51790 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CLCN3P51790 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CLCN3P51790 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLCN3P51790 AL355312.1-201ENST00000407115 2176 ntBASIC19.16■□□□□ 0.66
CLCN3P51790 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLCN3P51790 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC19.16■□□□□ 0.66
CLCN3P51790 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CLCN3P51790 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.16■□□□□ 0.66
CLCN3P51790 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.16■□□□□ 0.66
CLCN3P51790 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
CLCN3P51790 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
CLCN3P51790 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CLCN3P51790 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLCN3P51790 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLCN3P51790 MIR1233-2-201ENST00000408138 82 ntBASIC19.16■□□□□ 0.66
CLCN3P51790 MIR1233-1-201ENST00000408722 82 ntBASIC19.16■□□□□ 0.66
CLCN3P51790 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC19.16■□□□□ 0.66
CLCN3P51790 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLCN3P51790 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
CLCN3P51790 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.16■□□□□ 0.66
CLCN3P51790 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.16■□□□□ 0.66
CLCN3P51790 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
CLCN3P51790 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLCN3P51790 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLCN3P51790 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLCN3P51790 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.16■□□□□ 0.66
CLCN3P51790 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CLCN3P51790 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLCN3P51790 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLCN3P51790 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.16■□□□□ 0.66
CLCN3P51790 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.16■□□□□ 0.66
CLCN3P51790 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLCN3P51790 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CLCN3P51790 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CLCN3P51790 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCN3P51790 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.15■□□□□ 0.66
CLCN3P51790 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLCN3P51790 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCN3P51790 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCN3P51790 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCN3P51790 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCN3P51790 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLCN3P51790 CRYGEP-201ENST00000412192 528 ntBASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms