Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.79■□□□□ 0.28
SEMA3DO95025 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.79■□□□□ 0.28
SEMA3DO95025 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.79■□□□□ 0.28
SEMA3DO95025 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 AC016396.2-201ENST00000562575 1417 ntBASIC16.79■□□□□ 0.28
SEMA3DO95025 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SEMA3DO95025 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.78■□□□□ 0.28
SEMA3DO95025 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SEMA3DO95025 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SEMA3DO95025 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.78■□□□□ 0.28
SEMA3DO95025 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.78■□□□□ 0.28
SEMA3DO95025 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SEMA3DO95025 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SEMA3DO95025 AL645608.8-201ENST00000606034 2086 ntBASIC16.78■□□□□ 0.28
SEMA3DO95025 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SEMA3DO95025 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
SEMA3DO95025 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.78■□□□□ 0.28
SEMA3DO95025 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
SEMA3DO95025 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SEMA3DO95025 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SEMA3DO95025 AP002383.4-201ENST00000442518 975 ntBASIC16.78■□□□□ 0.28
SEMA3DO95025 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SEMA3DO95025 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.78■□□□□ 0.28
SEMA3DO95025 TPSP2-201ENST00000561760 610 ntBASIC16.78■□□□□ 0.28
SEMA3DO95025 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.78■□□□□ 0.28
SEMA3DO95025 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.78■□□□□ 0.28
SEMA3DO95025 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.78■□□□□ 0.28
SEMA3DO95025 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.78■□□□□ 0.28
SEMA3DO95025 AC019129.2-201ENST00000609837 1235 ntBASIC16.78■□□□□ 0.28
SEMA3DO95025 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.78■□□□□ 0.28
SEMA3DO95025 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.78■□□□□ 0.28
SEMA3DO95025 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.78■□□□□ 0.28
SEMA3DO95025 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
SEMA3DO95025 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.78■□□□□ 0.28
SEMA3DO95025 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.78■□□□□ 0.28
SEMA3DO95025 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.78■□□□□ 0.28
SEMA3DO95025 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SEMA3DO95025 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SEMA3DO95025 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SEMA3DO95025 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
SEMA3DO95025 LYSMD4-203ENST00000378904 2122 ntBASIC16.78■□□□□ 0.28
SEMA3DO95025 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.78■□□□□ 0.28
SEMA3DO95025 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SEMA3DO95025 AC233702.3-201ENST00000578656 1387 ntBASIC16.77■□□□□ 0.28
SEMA3DO95025 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
SEMA3DO95025 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SEMA3DO95025 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
SEMA3DO95025 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.77■□□□□ 0.28
SEMA3DO95025 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SEMA3DO95025 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SEMA3DO95025 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.77■□□□□ 0.28
SEMA3DO95025 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.77■□□□□ 0.28
SEMA3DO95025 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
SEMA3DO95025 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
SEMA3DO95025 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.77■□□□□ 0.28
SEMA3DO95025 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SEMA3DO95025 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SEMA3DO95025 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SEMA3DO95025 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SEMA3DO95025 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SEMA3DO95025 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SEMA3DO95025 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SEMA3DO95025 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.77■□□□□ 0.28
SEMA3DO95025 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.77■□□□□ 0.28
SEMA3DO95025 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.77■□□□□ 0.28
SEMA3DO95025 IGHV3-52-201ENST00000519770 353 ntBASIC16.77■□□□□ 0.28
SEMA3DO95025 AP005901.3-202ENST00000581653 237 ntBASIC16.77■□□□□ 0.28
SEMA3DO95025 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
SEMA3DO95025 AP002414.4-201ENST00000589764 1148 ntBASIC16.77■□□□□ 0.28
SEMA3DO95025 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SEMA3DO95025 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.77■□□□□ 0.28
SEMA3DO95025 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SEMA3DO95025 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SEMA3DO95025 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SEMA3DO95025 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.27
SEMA3DO95025 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.77■□□□□ 0.27
SEMA3DO95025 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SEMA3DO95025 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SEMA3DO95025 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.77■□□□□ 0.27
SEMA3DO95025 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SEMA3DO95025 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SEMA3DO95025 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
SEMA3DO95025 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
SEMA3DO95025 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SEMA3DO95025 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.76■□□□□ 0.27
SEMA3DO95025 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.76■□□□□ 0.27
SEMA3DO95025 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
SEMA3DO95025 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.76■□□□□ 0.27
SEMA3DO95025 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SEMA3DO95025 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms