Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
CUEDC1Q9NWM3 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.54■■□□□ 1.36
CUEDC1Q9NWM3 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CUEDC1Q9NWM3 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.54■■□□□ 1.36
CUEDC1Q9NWM3 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CUEDC1Q9NWM3 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CUEDC1Q9NWM3 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
CUEDC1Q9NWM3 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
CUEDC1Q9NWM3 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.52■■□□□ 1.36
CUEDC1Q9NWM3 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
CUEDC1Q9NWM3 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.52■■□□□ 1.36
CUEDC1Q9NWM3 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 PFN2-211ENST00000489155 636 ntTSL 4 BASIC23.51■■□□□ 1.35
CUEDC1Q9NWM3 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.5■■□□□ 1.35
CUEDC1Q9NWM3 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC23.49■■□□□ 1.35
CUEDC1Q9NWM3 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.49■■□□□ 1.35
CUEDC1Q9NWM3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.49■■□□□ 1.35
CUEDC1Q9NWM3 AC007029.1-201ENST00000604183 313 ntBASIC23.49■■□□□ 1.35
CUEDC1Q9NWM3 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CUEDC1Q9NWM3 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC23.49■■□□□ 1.35
CUEDC1Q9NWM3 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CUEDC1Q9NWM3 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
CUEDC1Q9NWM3 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CUEDC1Q9NWM3 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CUEDC1Q9NWM3 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.47■■□□□ 1.35
CUEDC1Q9NWM3 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CUEDC1Q9NWM3 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CUEDC1Q9NWM3 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CUEDC1Q9NWM3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CUEDC1Q9NWM3 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
CUEDC1Q9NWM3 MIR3960-201ENST00000583311 91 ntBASIC23.46■■□□□ 1.35
CUEDC1Q9NWM3 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.45■■□□□ 1.35
CUEDC1Q9NWM3 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CUEDC1Q9NWM3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CUEDC1Q9NWM3 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC23.45■■□□□ 1.34
CUEDC1Q9NWM3 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CUEDC1Q9NWM3 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.34
CUEDC1Q9NWM3 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
CUEDC1Q9NWM3 RP9P-202ENST00000450133 1212 ntBASIC23.44■■□□□ 1.34
CUEDC1Q9NWM3 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CUEDC1Q9NWM3 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.44■■□□□ 1.34
CUEDC1Q9NWM3 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
CUEDC1Q9NWM3 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
CUEDC1Q9NWM3 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
CUEDC1Q9NWM3 AC093536.1-201ENST00000569153 554 ntBASIC23.43■■□□□ 1.34
CUEDC1Q9NWM3 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
CUEDC1Q9NWM3 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
CUEDC1Q9NWM3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
CUEDC1Q9NWM3 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.42■■□□□ 1.34
CUEDC1Q9NWM3 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CUEDC1Q9NWM3 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.41■■□□□ 1.34
CUEDC1Q9NWM3 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CUEDC1Q9NWM3 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CUEDC1Q9NWM3 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CUEDC1Q9NWM3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
CUEDC1Q9NWM3 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.4■■□□□ 1.34
CUEDC1Q9NWM3 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.4■■□□□ 1.34
CUEDC1Q9NWM3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CUEDC1Q9NWM3 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.39■■□□□ 1.34
CUEDC1Q9NWM3 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.39■■□□□ 1.34
CUEDC1Q9NWM3 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CUEDC1Q9NWM3 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms