Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 AC133552.2-201ENST00000619106 1032 ntBASIC21.83■■□□□ 1.09
CPNE4Q96A23 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CPNE4Q96A23 AC135731.1-201ENST00000569415 2548 ntBASIC21.83■■□□□ 1.09
CPNE4Q96A23 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CPNE4Q96A23 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CPNE4Q96A23 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
CPNE4Q96A23 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CPNE4Q96A23 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.82■■□□□ 1.08
CPNE4Q96A23 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
CPNE4Q96A23 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CPNE4Q96A23 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.82■■□□□ 1.08
CPNE4Q96A23 U85056.1-201ENST00000616429 682 ntBASIC21.82■■□□□ 1.08
CPNE4Q96A23 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.82■■□□□ 1.08
CPNE4Q96A23 AC009831.1-201ENST00000580420 1582 ntBASIC21.82■■□□□ 1.08
CPNE4Q96A23 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CPNE4Q96A23 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CPNE4Q96A23 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CPNE4Q96A23 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CPNE4Q96A23 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.81■■□□□ 1.08
CPNE4Q96A23 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CPNE4Q96A23 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
CPNE4Q96A23 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CPNE4Q96A23 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CPNE4Q96A23 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.8■■□□□ 1.08
CPNE4Q96A23 AL121749.1-202ENST00000609313 2153 ntBASIC21.8■■□□□ 1.08
CPNE4Q96A23 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
CPNE4Q96A23 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.8■■□□□ 1.08
CPNE4Q96A23 RAP2CP1-202ENST00000605179 643 ntBASIC21.8■■□□□ 1.08
CPNE4Q96A23 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CPNE4Q96A23 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
CPNE4Q96A23 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CPNE4Q96A23 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
CPNE4Q96A23 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CPNE4Q96A23 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CPNE4Q96A23 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CPNE4Q96A23 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.79■■□□□ 1.08
CPNE4Q96A23 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CPNE4Q96A23 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CPNE4Q96A23 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CPNE4Q96A23 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CPNE4Q96A23 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
CPNE4Q96A23 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CPNE4Q96A23 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
CPNE4Q96A23 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CPNE4Q96A23 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CPNE4Q96A23 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CPNE4Q96A23 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CPNE4Q96A23 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CPNE4Q96A23 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CPNE4Q96A23 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CPNE4Q96A23 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CPNE4Q96A23 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CPNE4Q96A23 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CPNE4Q96A23 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CPNE4Q96A23 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.76■■□□□ 1.07
CPNE4Q96A23 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CPNE4Q96A23 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CPNE4Q96A23 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CPNE4Q96A23 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
CPNE4Q96A23 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.75■■□□□ 1.07
CPNE4Q96A23 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CPNE4Q96A23 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CPNE4Q96A23 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CPNE4Q96A23 AL592293.1-201ENST00000502889 1188 ntBASIC21.75■■□□□ 1.07
CPNE4Q96A23 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CPNE4Q96A23 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
CPNE4Q96A23 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.75■■□□□ 1.07
CPNE4Q96A23 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPNE4Q96A23 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPNE4Q96A23 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.74■■□□□ 1.07
CPNE4Q96A23 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPNE4Q96A23 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.74■■□□□ 1.07
CPNE4Q96A23 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CPNE4Q96A23 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPNE4Q96A23 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CPNE4Q96A23 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
CPNE4Q96A23 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CPNE4Q96A23 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.73■■□□□ 1.07
CPNE4Q96A23 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CPNE4Q96A23 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CPNE4Q96A23 KRT18P60-201ENST00000312876 1297 ntBASIC21.73■■□□□ 1.07
CPNE4Q96A23 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CPNE4Q96A23 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CPNE4Q96A23 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CPNE4Q96A23 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CPNE4Q96A23 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CPNE4Q96A23 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CPNE4Q96A23 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPNE4Q96A23 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.72■■□□□ 1.07
CPNE4Q96A23 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPNE4Q96A23 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
CPNE4Q96A23 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
CPNE4Q96A23 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPNE4Q96A23 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CPNE4Q96A23 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPNE4Q96A23 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPNE4Q96A23 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPNE4Q96A23 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.7■■□□□ 1.06
CPNE4Q96A23 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPNE4Q96A23 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms