Protein–RNA interactions for Protein: Q8TF05

PPP4R1, Serine/threonine-protein phosphatase 4 regulatory subunit 1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1Q8TF05 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PPP4R1Q8TF05 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PPP4R1Q8TF05 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.21■■□□□ 1.47
PPP4R1Q8TF05 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
PPP4R1Q8TF05 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PPP4R1Q8TF05 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
PPP4R1Q8TF05 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC24.2■■□□□ 1.46
PPP4R1Q8TF05 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
PPP4R1Q8TF05 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
PPP4R1Q8TF05 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC24.19■■□□□ 1.46
PPP4R1Q8TF05 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
PPP4R1Q8TF05 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
PPP4R1Q8TF05 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
PPP4R1Q8TF05 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC24.18■■□□□ 1.46
PPP4R1Q8TF05 WHAMMP3-201ENST00000611636 1609 ntBASIC24.18■■□□□ 1.46
PPP4R1Q8TF05 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC24.18■■□□□ 1.46
PPP4R1Q8TF05 AC093323.1-202ENST00000635031 2045 ntBASIC24.18■■□□□ 1.46
PPP4R1Q8TF05 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PPP4R1Q8TF05 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC24.18■■□□□ 1.46
PPP4R1Q8TF05 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R1Q8TF05 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R1Q8TF05 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R1Q8TF05 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
PPP4R1Q8TF05 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC24.17■■□□□ 1.46
PPP4R1Q8TF05 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R1Q8TF05 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC24.17■■□□□ 1.46
PPP4R1Q8TF05 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
PPP4R1Q8TF05 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 DUX4L13-201ENST00000554103 1267 ntBASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 DUX4L15-201ENST00000611059 1267 ntBASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 DUX4L23-201ENST00000615195 1269 ntBASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 DUX4L24-201ENST00000617576 1269 ntBASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 DUX4L22-201ENST00000618238 1269 ntBASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 DUX4L20-201ENST00000619712 1269 ntBASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 DUX4L21-201ENST00000622058 1269 ntBASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 DUX4L10-201ENST00000622460 1267 ntBASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 DUX4L25-201ENST00000624915 1269 ntBASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
PPP4R1Q8TF05 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC24.15■■□□□ 1.46
PPP4R1Q8TF05 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PPP4R1Q8TF05 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PPP4R1Q8TF05 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC24.15■■□□□ 1.46
PPP4R1Q8TF05 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.15■■□□□ 1.46
PPP4R1Q8TF05 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PPP4R1Q8TF05 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
PPP4R1Q8TF05 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
PPP4R1Q8TF05 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.46
PPP4R1Q8TF05 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PPP4R1Q8TF05 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PPP4R1Q8TF05 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC24.13■■□□□ 1.45
PPP4R1Q8TF05 RPS2-210ENST00000530225 765 ntTSL 2 BASIC24.13■■□□□ 1.45
PPP4R1Q8TF05 HSD17B1P1-201ENST00000590052 955 ntBASIC24.13■■□□□ 1.45
PPP4R1Q8TF05 CEBPA-AS1-201ENST00000592982 2198 ntBASIC24.13■■□□□ 1.45
PPP4R1Q8TF05 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC24.13■■□□□ 1.45
PPP4R1Q8TF05 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PPP4R1Q8TF05 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC24.13■■□□□ 1.45
PPP4R1Q8TF05 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PPP4R1Q8TF05 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC24.12■■□□□ 1.45
PPP4R1Q8TF05 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PPP4R1Q8TF05 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PPP4R1Q8TF05 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
PPP4R1Q8TF05 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
PPP4R1Q8TF05 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
PPP4R1Q8TF05 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
PPP4R1Q8TF05 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
PPP4R1Q8TF05 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC24.11■■□□□ 1.45
PPP4R1Q8TF05 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PPP4R1Q8TF05 CHML-204ENST00000638121 920 ntTSL 2 BASIC24.1■■□□□ 1.45
PPP4R1Q8TF05 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PPP4R1Q8TF05 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PPP4R1Q8TF05 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PPP4R1Q8TF05 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
PPP4R1Q8TF05 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC24.09■■□□□ 1.45
PPP4R1Q8TF05 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PPP4R1Q8TF05 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PPP4R1Q8TF05 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC24.08■■□□□ 1.45
PPP4R1Q8TF05 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC24.08■■□□□ 1.45
PPP4R1Q8TF05 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PPP4R1Q8TF05 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC24.08■■□□□ 1.45
PPP4R1Q8TF05 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
PPP4R1Q8TF05 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PPP4R1Q8TF05 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
PPP4R1Q8TF05 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PPP4R1Q8TF05 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PPP4R1Q8TF05 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PPP4R1Q8TF05 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PPP4R1Q8TF05 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
PPP4R1Q8TF05 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PPP4R1Q8TF05 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PPP4R1Q8TF05 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC24.06■■□□□ 1.44
PPP4R1Q8TF05 HES6-205ENST00000409356 528 ntTSL 2 BASIC24.06■■□□□ 1.44
PPP4R1Q8TF05 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
PPP4R1Q8TF05 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms