Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 MIR4508-201ENST00000584178 70 ntBASIC7.43□□□□□ -1.22
SYNE1Q8NF91 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SYNE1Q8NF91 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 AC103724.3-201ENST00000564481 992 ntBASIC7.42□□□□□ -1.22
SYNE1Q8NF91 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
SYNE1Q8NF91 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 IDNK-203ENST00000405990 629 ntTSL 2 BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 HES6-204ENST00000409182 863 ntTSL 2 BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
SYNE1Q8NF91 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 THA1P-201ENST00000590384 1145 ntBASIC7.4□□□□□ -1.22
SYNE1Q8NF91 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
SYNE1Q8NF91 IDNK-201ENST00000376417 511 ntTSL 5 BASIC7.4□□□□□ -1.23
SYNE1Q8NF91 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
SYNE1Q8NF91 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
SYNE1Q8NF91 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
SYNE1Q8NF91 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC7.4□□□□□ -1.23
SYNE1Q8NF91 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC7.4□□□□□ -1.23
SYNE1Q8NF91 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC7.4□□□□□ -1.23
SYNE1Q8NF91 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC7.4□□□□□ -1.23
SYNE1Q8NF91 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC7.4□□□□□ -1.23
SYNE1Q8NF91 MIR6765-201ENST00000614092 87 ntBASIC7.4□□□□□ -1.23
SYNE1Q8NF91 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
SYNE1Q8NF91 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
SYNE1Q8NF91 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC7.39□□□□□ -1.23
SYNE1Q8NF91 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms