Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS13CQ709C8 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS13CQ709C8 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS13CQ709C8 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
VPS13CQ709C8 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS13CQ709C8 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
VPS13CQ709C8 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS13CQ709C8 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS13CQ709C8 AC019171.1-201ENST00000601251 1056 ntBASIC20.66■□□□□ 0.9
VPS13CQ709C8 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS13CQ709C8 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS13CQ709C8 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS13CQ709C8 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS13CQ709C8 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS13CQ709C8 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.65■□□□□ 0.9
VPS13CQ709C8 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
VPS13CQ709C8 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS13CQ709C8 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
VPS13CQ709C8 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
VPS13CQ709C8 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS13CQ709C8 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
VPS13CQ709C8 AC087393.1-201ENST00000582896 145 ntBASIC20.64■□□□□ 0.89
VPS13CQ709C8 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.64■□□□□ 0.89
VPS13CQ709C8 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS13CQ709C8 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS13CQ709C8 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.63■□□□□ 0.89
VPS13CQ709C8 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
VPS13CQ709C8 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS13CQ709C8 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS13CQ709C8 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS13CQ709C8 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.62■□□□□ 0.89
VPS13CQ709C8 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS13CQ709C8 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.62■□□□□ 0.89
VPS13CQ709C8 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
VPS13CQ709C8 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS13CQ709C8 MIR4787-201ENST00000607364 84 ntBASIC20.62■□□□□ 0.89
VPS13CQ709C8 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
VPS13CQ709C8 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.62■□□□□ 0.89
VPS13CQ709C8 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS13CQ709C8 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
VPS13CQ709C8 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS13CQ709C8 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS13CQ709C8 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS13CQ709C8 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS13CQ709C8 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS13CQ709C8 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS13CQ709C8 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.6■□□□□ 0.89
VPS13CQ709C8 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS13CQ709C8 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13CQ709C8 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13CQ709C8 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13CQ709C8 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS13CQ709C8 UNC93B8-201ENST00000511903 705 ntBASIC20.6■□□□□ 0.89
VPS13CQ709C8 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.6■□□□□ 0.89
VPS13CQ709C8 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13CQ709C8 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS13CQ709C8 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS13CQ709C8 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS13CQ709C8 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS13CQ709C8 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS13CQ709C8 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VPS13CQ709C8 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.58■□□□□ 0.89
VPS13CQ709C8 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS13CQ709C8 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.58■□□□□ 0.88
VPS13CQ709C8 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS13CQ709C8 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS13CQ709C8 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC20.58■□□□□ 0.88
VPS13CQ709C8 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
VPS13CQ709C8 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
VPS13CQ709C8 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS13CQ709C8 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS13CQ709C8 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS13CQ709C8 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.57■□□□□ 0.88
VPS13CQ709C8 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS13CQ709C8 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS13CQ709C8 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS13CQ709C8 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS13CQ709C8 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS13CQ709C8 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS13CQ709C8 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS13CQ709C8 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS13CQ709C8 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS13CQ709C8 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.55■□□□□ 0.88
VPS13CQ709C8 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS13CQ709C8 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.55■□□□□ 0.88
VPS13CQ709C8 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
VPS13CQ709C8 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS13CQ709C8 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS13CQ709C8 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS13CQ709C8 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS13CQ709C8 AC022616.5-201ENST00000518796 181 ntBASIC20.54■□□□□ 0.88
VPS13CQ709C8 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS13CQ709C8 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
VPS13CQ709C8 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS13CQ709C8 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
VPS13CQ709C8 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS13CQ709C8 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS13CQ709C8 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS13CQ709C8 AC131281.2-201ENST00000520478 145 ntBASIC20.53■□□□□ 0.88
VPS13CQ709C8 AL139246.5-201ENST00000606645 996 ntBASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms