Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC22.61■■□□□ 1.21
RNF4P78317 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC22.61■■□□□ 1.21
RNF4P78317 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.61■■□□□ 1.21
RNF4P78317 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
RNF4P78317 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC22.61■■□□□ 1.21
RNF4P78317 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
RNF4P78317 KRT18P60-201ENST00000312876 1297 ntBASIC22.6■■□□□ 1.21
RNF4P78317 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
RNF4P78317 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.6■■□□□ 1.21
RNF4P78317 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
RNF4P78317 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
RNF4P78317 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.59■■□□□ 1.21
RNF4P78317 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
RNF4P78317 AL592293.1-201ENST00000502889 1188 ntBASIC22.59■■□□□ 1.21
RNF4P78317 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
RNF4P78317 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.21
RNF4P78317 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
RNF4P78317 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
RNF4P78317 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC22.58■■□□□ 1.21
RNF4P78317 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
RNF4P78317 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
RNF4P78317 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
RNF4P78317 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
RNF4P78317 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.2
RNF4P78317 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.58■■□□□ 1.2
RNF4P78317 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
RNF4P78317 AL121749.1-202ENST00000609313 2153 ntBASIC22.57■■□□□ 1.2
RNF4P78317 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.57■■□□□ 1.2
RNF4P78317 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
RNF4P78317 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC22.57■■□□□ 1.2
RNF4P78317 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC22.57■■□□□ 1.2
RNF4P78317 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.57■■□□□ 1.2
RNF4P78317 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC22.57■■□□□ 1.2
RNF4P78317 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
RNF4P78317 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
RNF4P78317 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC22.56■■□□□ 1.2
RNF4P78317 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RNF4P78317 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
RNF4P78317 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RNF4P78317 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RNF4P78317 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC22.55■■□□□ 1.2
RNF4P78317 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RNF4P78317 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.54■■□□□ 1.2
RNF4P78317 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
RNF4P78317 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RNF4P78317 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
RNF4P78317 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
RNF4P78317 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
RNF4P78317 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
RNF4P78317 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
RNF4P78317 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC22.53■■□□□ 1.2
RNF4P78317 AC012354.3-201ENST00000623734 483 ntBASIC22.53■■□□□ 1.2
RNF4P78317 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RNF4P78317 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RNF4P78317 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RNF4P78317 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC22.52■■□□□ 1.2
RNF4P78317 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RNF4P78317 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC22.52■■□□□ 1.2
RNF4P78317 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
RNF4P78317 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC22.51■■□□□ 1.19
RNF4P78317 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RNF4P78317 AC129492.7-201ENST00000622992 756 ntBASIC22.51■■□□□ 1.19
RNF4P78317 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RNF4P78317 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RNF4P78317 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.5■■□□□ 1.19
RNF4P78317 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RNF4P78317 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
RNF4P78317 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC22.5■■□□□ 1.19
RNF4P78317 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC22.5■■□□□ 1.19
RNF4P78317 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC22.5■■□□□ 1.19
RNF4P78317 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
RNF4P78317 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
RNF4P78317 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RNF4P78317 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RNF4P78317 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
RNF4P78317 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
RNF4P78317 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RNF4P78317 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
RNF4P78317 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RNF4P78317 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RNF4P78317 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC22.48■■□□□ 1.19
RNF4P78317 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RNF4P78317 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
RNF4P78317 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
RNF4P78317 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
RNF4P78317 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
RNF4P78317 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RNF4P78317 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
RNF4P78317 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
RNF4P78317 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
RNF4P78317 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
RNF4P78317 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.47■■□□□ 1.19
RNF4P78317 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
RNF4P78317 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
RNF4P78317 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
RNF4P78317 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
RNF4P78317 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
RNF4P78317 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
RNF4P78317 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC22.46■■□□□ 1.19
RNF4P78317 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms