Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.12■■□□□ 1.29
PTPN6P29350 AC008813.1-201ENST00000536597 885 ntBASIC23.12■■□□□ 1.29
PTPN6P29350 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
PTPN6P29350 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PTPN6P29350 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
PTPN6P29350 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.11■■□□□ 1.29
PTPN6P29350 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PTPN6P29350 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.11■■□□□ 1.29
PTPN6P29350 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
PTPN6P29350 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.1■■□□□ 1.29
PTPN6P29350 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
PTPN6P29350 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.1■■□□□ 1.29
PTPN6P29350 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PTPN6P29350 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.1■■□□□ 1.29
PTPN6P29350 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC23.1■■□□□ 1.29
PTPN6P29350 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.1■■□□□ 1.29
PTPN6P29350 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.1■■□□□ 1.29
PTPN6P29350 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
PTPN6P29350 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PTPN6P29350 AC010501.1-201ENST00000606270 1962 ntBASIC23.09■■□□□ 1.29
PTPN6P29350 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
PTPN6P29350 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
PTPN6P29350 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
PTPN6P29350 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.09■■□□□ 1.29
PTPN6P29350 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
PTPN6P29350 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.09■■□□□ 1.29
PTPN6P29350 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
PTPN6P29350 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
PTPN6P29350 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.08■■□□□ 1.29
PTPN6P29350 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PTPN6P29350 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PTPN6P29350 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.08■■□□□ 1.29
PTPN6P29350 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.08■■□□□ 1.29
PTPN6P29350 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PTPN6P29350 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
PTPN6P29350 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
PTPN6P29350 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
PTPN6P29350 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PTPN6P29350 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.07■■□□□ 1.28
PTPN6P29350 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PTPN6P29350 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
PTPN6P29350 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PTPN6P29350 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PTPN6P29350 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
PTPN6P29350 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
PTPN6P29350 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
PTPN6P29350 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PTPN6P29350 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PTPN6P29350 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PTPN6P29350 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PTPN6P29350 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.05■■□□□ 1.28
PTPN6P29350 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
PTPN6P29350 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PTPN6P29350 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC23.05■■□□□ 1.28
PTPN6P29350 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
PTPN6P29350 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PTPN6P29350 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.05■■□□□ 1.28
PTPN6P29350 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.05■■□□□ 1.28
PTPN6P29350 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
PTPN6P29350 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
PTPN6P29350 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN6P29350 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN6P29350 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN6P29350 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN6P29350 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN6P29350 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN6P29350 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN6P29350 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN6P29350 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN6P29350 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN6P29350 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
PTPN6P29350 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.02■■□□□ 1.28
PTPN6P29350 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTPN6P29350 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
PTPN6P29350 MIR219A2-201ENST00000608502 1504 ntBASIC23.02■■□□□ 1.28
PTPN6P29350 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
PTPN6P29350 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTPN6P29350 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.01■■□□□ 1.27
PTPN6P29350 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTPN6P29350 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.01■■□□□ 1.27
PTPN6P29350 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTPN6P29350 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTPN6P29350 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTPN6P29350 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
PTPN6P29350 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PTPN6P29350 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
PTPN6P29350 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23■■□□□ 1.27
PTPN6P29350 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23■■□□□ 1.27
PTPN6P29350 AC148477.6-201ENST00000623746 465 ntBASIC23■■□□□ 1.27
PTPN6P29350 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23■■□□□ 1.27
PTPN6P29350 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
PTPN6P29350 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
PTPN6P29350 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC22.99■■□□□ 1.27
PTPN6P29350 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
PTPN6P29350 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC22.99■■□□□ 1.27
PTPN6P29350 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
PTPN6P29350 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.99■■□□□ 1.27
PTPN6P29350 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PTPN6P29350 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PTPN6P29350 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms