Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
UPK3AO75631 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.83■■□□□ 1.09
UPK3AO75631 DUSP8P4-201ENST00000399538 1761 ntBASIC21.83■■□□□ 1.09
UPK3AO75631 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
UPK3AO75631 AC092803.2-201ENST00000564287 1899 ntBASIC21.82■■□□□ 1.08
UPK3AO75631 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
UPK3AO75631 GPX1-201ENST00000419349 1106 ntBASIC21.82■■□□□ 1.08
UPK3AO75631 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
UPK3AO75631 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
UPK3AO75631 AC020928.2-201ENST00000588717 2197 ntBASIC21.82■■□□□ 1.08
UPK3AO75631 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
UPK3AO75631 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
UPK3AO75631 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
UPK3AO75631 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
UPK3AO75631 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.81■■□□□ 1.08
UPK3AO75631 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
UPK3AO75631 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
UPK3AO75631 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
UPK3AO75631 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
UPK3AO75631 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
UPK3AO75631 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
UPK3AO75631 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
UPK3AO75631 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
UPK3AO75631 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.79■■□□□ 1.08
UPK3AO75631 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
UPK3AO75631 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.79■■□□□ 1.08
UPK3AO75631 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.79■■□□□ 1.08
UPK3AO75631 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
UPK3AO75631 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.79■■□□□ 1.08
UPK3AO75631 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.78■■□□□ 1.08
UPK3AO75631 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
UPK3AO75631 AL157400.5-201ENST00000507624 621 ntBASIC21.78■■□□□ 1.08
UPK3AO75631 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.78■■□□□ 1.08
UPK3AO75631 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
UPK3AO75631 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
UPK3AO75631 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
UPK3AO75631 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.77■■□□□ 1.08
UPK3AO75631 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
UPK3AO75631 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
UPK3AO75631 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
UPK3AO75631 AL359504.2-201ENST00000605506 1601 ntBASIC21.77■■□□□ 1.07
UPK3AO75631 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPK3AO75631 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPK3AO75631 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UPK3AO75631 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.76■■□□□ 1.07
UPK3AO75631 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPK3AO75631 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UPK3AO75631 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UPK3AO75631 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UPK3AO75631 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UPK3AO75631 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.75■■□□□ 1.07
UPK3AO75631 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UPK3AO75631 AC142472.1-201ENST00000612013 1741 ntBASIC21.75■■□□□ 1.07
UPK3AO75631 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.75■■□□□ 1.07
UPK3AO75631 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.75■■□□□ 1.07
UPK3AO75631 AC092296.2-201ENST00000589470 999 ntBASIC21.75■■□□□ 1.07
UPK3AO75631 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
UPK3AO75631 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.75■■□□□ 1.07
UPK3AO75631 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UPK3AO75631 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UPK3AO75631 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.74■■□□□ 1.07
UPK3AO75631 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UPK3AO75631 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UPK3AO75631 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UPK3AO75631 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.73■■□□□ 1.07
UPK3AO75631 HSD17B1P1-201ENST00000590052 955 ntBASIC21.73■■□□□ 1.07
UPK3AO75631 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
UPK3AO75631 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UPK3AO75631 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
UPK3AO75631 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
UPK3AO75631 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UPK3AO75631 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UPK3AO75631 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.72■■□□□ 1.07
UPK3AO75631 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.72■■□□□ 1.07
UPK3AO75631 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UPK3AO75631 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.72■■□□□ 1.07
UPK3AO75631 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UPK3AO75631 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UPK3AO75631 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
UPK3AO75631 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
UPK3AO75631 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.71■■□□□ 1.07
UPK3AO75631 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
UPK3AO75631 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
UPK3AO75631 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
UPK3AO75631 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
UPK3AO75631 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
UPK3AO75631 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
UPK3AO75631 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.7■■□□□ 1.06
UPK3AO75631 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
UPK3AO75631 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
UPK3AO75631 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
UPK3AO75631 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.69■■□□□ 1.06
UPK3AO75631 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
UPK3AO75631 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
UPK3AO75631 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
UPK3AO75631 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
UPK3AO75631 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.69■■□□□ 1.06
UPK3AO75631 ECEL1P2-201ENST00000461596 1295 ntBASIC21.69■■□□□ 1.06
UPK3AO75631 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
UPK3AO75631 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms