Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
USH2AO75445 GLI3-203ENST00000437480 451 ntTSL 2 BASIC11.19□□□□□ -0.62
USH2AO75445 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
USH2AO75445 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
USH2AO75445 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
USH2AO75445 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC11.19□□□□□ -0.62
USH2AO75445 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC11.19□□□□□ -0.62
USH2AO75445 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC11.19□□□□□ -0.62
USH2AO75445 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC11.18□□□□□ -0.62
USH2AO75445 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
USH2AO75445 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC11.18□□□□□ -0.62
USH2AO75445 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC11.18□□□□□ -0.62
USH2AO75445 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC11.18□□□□□ -0.62
USH2AO75445 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC11.18□□□□□ -0.62
USH2AO75445 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
USH2AO75445 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC11.18□□□□□ -0.62
USH2AO75445 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC11.18□□□□□ -0.62
USH2AO75445 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
USH2AO75445 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
USH2AO75445 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
USH2AO75445 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
USH2AO75445 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC11.18□□□□□ -0.62
USH2AO75445 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
USH2AO75445 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
USH2AO75445 MEST-211ENST00000437945 1455 ntTSL 5 BASIC11.18□□□□□ -0.62
USH2AO75445 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC11.17□□□□□ -0.62
USH2AO75445 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC11.17□□□□□ -0.62
USH2AO75445 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
USH2AO75445 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC11.17□□□□□ -0.62
USH2AO75445 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC11.17□□□□□ -0.62
USH2AO75445 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
USH2AO75445 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
USH2AO75445 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
USH2AO75445 TSPY9P-201ENST00000440215 945 ntBASIC11.17□□□□□ -0.62
USH2AO75445 TSPY11P-201ENST00000442607 1045 ntBASIC11.17□□□□□ -0.62
USH2AO75445 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC11.17□□□□□ -0.62
USH2AO75445 TRIR-202ENST00000588213 841 ntTSL 3 BASIC11.17□□□□□ -0.62
USH2AO75445 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
USH2AO75445 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
USH2AO75445 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
USH2AO75445 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
USH2AO75445 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
USH2AO75445 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
USH2AO75445 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC11.16□□□□□ -0.62
USH2AO75445 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC11.16□□□□□ -0.62
USH2AO75445 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC11.16□□□□□ -0.62
USH2AO75445 AC142381.2-201ENST00000566120 298 ntBASIC11.16□□□□□ -0.62
USH2AO75445 MIR6821-201ENST00000617625 74 ntBASIC11.16□□□□□ -0.62
USH2AO75445 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
USH2AO75445 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC11.16□□□□□ -0.62
USH2AO75445 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
USH2AO75445 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC11.16□□□□□ -0.62
USH2AO75445 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
USH2AO75445 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC11.15□□□□□ -0.62
USH2AO75445 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC11.15□□□□□ -0.62
USH2AO75445 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
USH2AO75445 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
USH2AO75445 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC11.15□□□□□ -0.62
USH2AO75445 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
USH2AO75445 ESRRAP2-201ENST00000418437 1549 ntBASIC11.15□□□□□ -0.62
USH2AO75445 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
USH2AO75445 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC11.15□□□□□ -0.62
USH2AO75445 AC087393.1-201ENST00000582896 145 ntBASIC11.15□□□□□ -0.62
USH2AO75445 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
USH2AO75445 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
USH2AO75445 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.63
USH2AO75445 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
USH2AO75445 PLD4-205ENST00000553861 667 ntTSL 2 BASIC11.14□□□□□ -0.63
USH2AO75445 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
USH2AO75445 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC11.14□□□□□ -0.63
USH2AO75445 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
USH2AO75445 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
USH2AO75445 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC11.14□□□□□ -0.63
USH2AO75445 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC11.13□□□□□ -0.63
USH2AO75445 BX664725.1-201ENST00000438252 379 ntBASIC11.13□□□□□ -0.63
USH2AO75445 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
USH2AO75445 PARL-206ENST00000435888 1098 ntTSL 5 BASIC11.13□□□□□ -0.63
USH2AO75445 AL512631.2-201ENST00000604634 923 ntBASIC11.13□□□□□ -0.63
USH2AO75445 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
USH2AO75445 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
USH2AO75445 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC11.13□□□□□ -0.63
USH2AO75445 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC11.13□□□□□ -0.63
USH2AO75445 MIR3621-201ENST00000580529 85 ntBASIC11.13□□□□□ -0.63
USH2AO75445 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
USH2AO75445 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC11.13□□□□□ -0.63
USH2AO75445 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC11.13□□□□□ -0.63
USH2AO75445 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
USH2AO75445 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
USH2AO75445 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC11.13□□□□□ -0.63
USH2AO75445 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC11.12□□□□□ -0.63
USH2AO75445 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
USH2AO75445 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC11.12□□□□□ -0.63
USH2AO75445 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
USH2AO75445 QDPR-206ENST00000508623 601 ntTSL 3 BASIC11.12□□□□□ -0.63
USH2AO75445 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC11.12□□□□□ -0.63
USH2AO75445 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC11.12□□□□□ -0.63
USH2AO75445 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC11.12□□□□□ -0.63
USH2AO75445 HYI-206ENST00000372434 1025 ntTSL 5 BASIC11.12□□□□□ -0.63
USH2AO75445 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
USH2AO75445 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms