Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
TRIM13O60858 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.42
TRIM13O60858 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
TRIM13O60858 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
TRIM13O60858 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.89■■□□□ 1.41
TRIM13O60858 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
TRIM13O60858 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
TRIM13O60858 AC142381.3-201ENST00000568208 1670 ntBASIC23.89■■□□□ 1.41
TRIM13O60858 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23.89■■□□□ 1.41
TRIM13O60858 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
TRIM13O60858 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
TRIM13O60858 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC23.88■■□□□ 1.41
TRIM13O60858 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.88■■□□□ 1.41
TRIM13O60858 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.88■■□□□ 1.41
TRIM13O60858 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.87■■□□□ 1.41
TRIM13O60858 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
TRIM13O60858 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
TRIM13O60858 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
TRIM13O60858 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
TRIM13O60858 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
TRIM13O60858 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.85■■□□□ 1.41
TRIM13O60858 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM13O60858 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM13O60858 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM13O60858 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
TRIM13O60858 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.84■■□□□ 1.41
TRIM13O60858 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.84■■□□□ 1.41
TRIM13O60858 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
TRIM13O60858 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.84■■□□□ 1.41
TRIM13O60858 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23.84■■□□□ 1.41
TRIM13O60858 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TRIM13O60858 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.41
TRIM13O60858 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC23.83■■□□□ 1.41
TRIM13O60858 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
TRIM13O60858 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.83■■□□□ 1.4
TRIM13O60858 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
TRIM13O60858 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM13O60858 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM13O60858 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.82■■□□□ 1.4
TRIM13O60858 LINC01971-201ENST00000617888 1048 ntBASIC23.82■■□□□ 1.4
TRIM13O60858 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.82■■□□□ 1.4
TRIM13O60858 AC022211.4-201ENST00000625094 2161 ntBASIC23.82■■□□□ 1.4
TRIM13O60858 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM13O60858 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
TRIM13O60858 AC008813.1-201ENST00000536597 885 ntBASIC23.81■■□□□ 1.4
TRIM13O60858 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM13O60858 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM13O60858 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.8■■□□□ 1.4
TRIM13O60858 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
TRIM13O60858 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM13O60858 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM13O60858 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM13O60858 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM13O60858 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.8■■□□□ 1.4
TRIM13O60858 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
TRIM13O60858 AC096887.2-201ENST00000623443 1957 ntBASIC23.8■■□□□ 1.4
TRIM13O60858 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
TRIM13O60858 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC23.79■■□□□ 1.4
TRIM13O60858 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
TRIM13O60858 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.79■■□□□ 1.4
TRIM13O60858 MIR219A2-201ENST00000608502 1504 ntBASIC23.79■■□□□ 1.4
TRIM13O60858 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.78■■□□□ 1.4
TRIM13O60858 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRIM13O60858 DUX4L13-201ENST00000554103 1267 ntBASIC23.78■■□□□ 1.4
TRIM13O60858 DUX4L15-201ENST00000611059 1267 ntBASIC23.78■■□□□ 1.4
TRIM13O60858 DUX4L23-201ENST00000615195 1269 ntBASIC23.78■■□□□ 1.4
TRIM13O60858 DUX4L24-201ENST00000617576 1269 ntBASIC23.78■■□□□ 1.4
TRIM13O60858 DUX4L22-201ENST00000618238 1269 ntBASIC23.78■■□□□ 1.4
TRIM13O60858 DUX4L20-201ENST00000619712 1269 ntBASIC23.78■■□□□ 1.4
TRIM13O60858 DUX4L21-201ENST00000622058 1269 ntBASIC23.78■■□□□ 1.4
TRIM13O60858 DUX4L10-201ENST00000622460 1267 ntBASIC23.78■■□□□ 1.4
TRIM13O60858 DUX4L25-201ENST00000624915 1269 ntBASIC23.78■■□□□ 1.4
TRIM13O60858 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
TRIM13O60858 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRIM13O60858 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.77■■□□□ 1.4
TRIM13O60858 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
TRIM13O60858 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
TRIM13O60858 AC138932.3-201ENST00000567634 1902 ntBASIC23.77■■□□□ 1.4
TRIM13O60858 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.77■■□□□ 1.4
TRIM13O60858 AC148477.6-201ENST00000623746 465 ntBASIC23.77■■□□□ 1.4
TRIM13O60858 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRIM13O60858 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRIM13O60858 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
TRIM13O60858 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC23.76■■□□□ 1.39
TRIM13O60858 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.75■■□□□ 1.39
TRIM13O60858 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
TRIM13O60858 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
TRIM13O60858 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TRIM13O60858 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
TRIM13O60858 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC23.74■■□□□ 1.39
TRIM13O60858 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.74■■□□□ 1.39
TRIM13O60858 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
TRIM13O60858 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM13O60858 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.73■■□□□ 1.39
TRIM13O60858 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM13O60858 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM13O60858 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM13O60858 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM13O60858 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC23.72■■□□□ 1.39
TRIM13O60858 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms