Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV4A0A0B4J268 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV4A0A0B4J268 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV4A0A0B4J268 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC17.45■□□□□ 0.38
TRAV4A0A0B4J268 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV4A0A0B4J268 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV4A0A0B4J268 METRNL-202ENST00000570778 967 ntTSL 5 BASIC17.44■□□□□ 0.38
TRAV4A0A0B4J268 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRAV4A0A0B4J268 MIR7108-201ENST00000614319 87 ntBASIC17.44■□□□□ 0.38
TRAV4A0A0B4J268 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV4A0A0B4J268 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAV4A0A0B4J268 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV4A0A0B4J268 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV4A0A0B4J268 DUSP8P4-201ENST00000399538 1761 ntBASIC17.43■□□□□ 0.38
TRAV4A0A0B4J268 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV4A0A0B4J268 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV4A0A0B4J268 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV4A0A0B4J268 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV4A0A0B4J268 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV4A0A0B4J268 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV4A0A0B4J268 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV4A0A0B4J268 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV4A0A0B4J268 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV4A0A0B4J268 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV4A0A0B4J268 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TRAV4A0A0B4J268 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
TRAV4A0A0B4J268 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC17.42■□□□□ 0.38
TRAV4A0A0B4J268 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC17.42■□□□□ 0.38
TRAV4A0A0B4J268 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
TRAV4A0A0B4J268 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV4A0A0B4J268 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV4A0A0B4J268 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV4A0A0B4J268 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TRAV4A0A0B4J268 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TRAV4A0A0B4J268 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAV4A0A0B4J268 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV4A0A0B4J268 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC17.41■□□□□ 0.38
TRAV4A0A0B4J268 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV4A0A0B4J268 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV4A0A0B4J268 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC17.41■□□□□ 0.38
TRAV4A0A0B4J268 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
TRAV4A0A0B4J268 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV4A0A0B4J268 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV4A0A0B4J268 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV4A0A0B4J268 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC17.4■□□□□ 0.38
TRAV4A0A0B4J268 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV4A0A0B4J268 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAV4A0A0B4J268 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC17.39■□□□□ 0.38
TRAV4A0A0B4J268 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TRAV4A0A0B4J268 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TRAV4A0A0B4J268 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
TRAV4A0A0B4J268 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC17.39■□□□□ 0.37
TRAV4A0A0B4J268 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV4A0A0B4J268 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV4A0A0B4J268 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV4A0A0B4J268 MED25-210ENST00000612854 801 ntTSL 5 BASIC17.39■□□□□ 0.37
TRAV4A0A0B4J268 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV4A0A0B4J268 MED25-214ENST00000622402 642 ntTSL 5 BASIC17.39■□□□□ 0.37
TRAV4A0A0B4J268 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV4A0A0B4J268 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV4A0A0B4J268 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
TRAV4A0A0B4J268 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
TRAV4A0A0B4J268 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV4A0A0B4J268 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV4A0A0B4J268 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV4A0A0B4J268 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
TRAV4A0A0B4J268 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
TRAV4A0A0B4J268 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV4A0A0B4J268 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
TRAV4A0A0B4J268 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV4A0A0B4J268 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC17.37■□□□□ 0.37
TRAV4A0A0B4J268 AL359504.2-201ENST00000605506 1601 ntBASIC17.37■□□□□ 0.37
TRAV4A0A0B4J268 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV4A0A0B4J268 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
TRAV4A0A0B4J268 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV4A0A0B4J268 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV4A0A0B4J268 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV4A0A0B4J268 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV4A0A0B4J268 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC17.36■□□□□ 0.37
TRAV4A0A0B4J268 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV4A0A0B4J268 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC17.36■□□□□ 0.37
TRAV4A0A0B4J268 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC17.36■□□□□ 0.37
TRAV4A0A0B4J268 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC17.36■□□□□ 0.37
TRAV4A0A0B4J268 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV4A0A0B4J268 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV4A0A0B4J268 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV4A0A0B4J268 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV4A0A0B4J268 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV4A0A0B4J268 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV4A0A0B4J268 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV4A0A0B4J268 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV4A0A0B4J268 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV4A0A0B4J268 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV4A0A0B4J268 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV4A0A0B4J268 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV4A0A0B4J268 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TRAV4A0A0B4J268 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV4A0A0B4J268 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV4A0A0B4J268 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV4A0A0B4J268 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms