Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 MIR662-201ENST00000384847 95 ntBASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 AC104076.2-201ENST00000448912 469 ntBASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 AP003733.1-201ENST00000491725 852 ntBASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 AC009154.2-201ENST00000621177 724 ntBASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 AL353692.3-201ENST00000407031 1396 ntBASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.9■□□□□ 0.46
TRIM56Q9BRZ2 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
TRIM56Q9BRZ2 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.89■□□□□ 0.46
TRIM56Q9BRZ2 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
TRIM56Q9BRZ2 AC084018.2-201ENST00000613093 2607 ntBASIC17.89■□□□□ 0.46
TRIM56Q9BRZ2 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 RNF152P1-201ENST00000397754 604 ntBASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.89■□□□□ 0.45
TRIM56Q9BRZ2 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 AK4P3-201ENST00000418260 669 ntBASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 ZNF444P1-201ENST00000559497 298 ntBASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.88■□□□□ 0.45
TRIM56Q9BRZ2 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms