Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 SNHG9-202ENST00000564014 471 ntBASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 AC138028.4-201ENST00000564984 1845 ntBASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDDC3Q8N4P3 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 AC006504.4-201ENST00000592118 1568 ntBASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 ELK2BP-201ENST00000415014 1224 ntBASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 METTL21AP1-201ENST00000438852 635 ntBASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 AP006288.1-201ENST00000446065 395 ntBASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 AC002558.1-201ENST00000488906 803 ntBASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDDC3Q8N4P3 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 AC108751.1-201ENST00000490852 363 ntBASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDDC3Q8N4P3 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 AC009336.1-201ENST00000608941 1553 ntBASIC17.53■□□□□ 0.4
HDDC3Q8N4P3 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms