Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC12.34□□□□□ -0.43
CKS1BP61024 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 KRASP1-201ENST00000407852 552 ntBASIC12.34□□□□□ -0.43
CKS1BP61024 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC12.34□□□□□ -0.43
CKS1BP61024 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 AP002982.1-201ENST00000492365 877 ntBASIC12.34□□□□□ -0.43
CKS1BP61024 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC12.34□□□□□ -0.43
CKS1BP61024 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC12.34□□□□□ -0.43
CKS1BP61024 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC12.34□□□□□ -0.43
CKS1BP61024 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC12.34□□□□□ -0.43
CKS1BP61024 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
CKS1BP61024 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC12.34□□□□□ -0.43
CKS1BP61024 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
CKS1BP61024 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC12.34□□□□□ -0.43
CKS1BP61024 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
CKS1BP61024 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
CKS1BP61024 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
CKS1BP61024 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 FRMD6-AS1-201ENST00000617151 2229 ntBASIC12.34□□□□□ -0.43
CKS1BP61024 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC12.34□□□□□ -0.43
CKS1BP61024 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
CKS1BP61024 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
CKS1BP61024 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
CKS1BP61024 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 AC024909.3-201ENST00000611513 2257 ntBASIC12.34□□□□□ -0.43
CKS1BP61024 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CKS1BP61024 AC093677.2-201ENST00000600169 1863 ntBASIC12.34□□□□□ -0.43
CKS1BP61024 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC12.33□□□□□ -0.43
CKS1BP61024 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
CKS1BP61024 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
CKS1BP61024 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.43
CKS1BP61024 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC12.33□□□□□ -0.43
CKS1BP61024 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
CKS1BP61024 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.43
CKS1BP61024 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
CKS1BP61024 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 SNCG-201ENST00000348795 684 ntTSL 2 BASIC12.33□□□□□ -0.44
CKS1BP61024 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
CKS1BP61024 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC12.33□□□□□ -0.44
CKS1BP61024 AP003097.1-201ENST00000530657 1135 ntBASIC12.33□□□□□ -0.44
CKS1BP61024 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC12.33□□□□□ -0.44
CKS1BP61024 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 AL445675.2-201ENST00000620291 557 ntBASIC12.33□□□□□ -0.44
CKS1BP61024 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC12.33□□□□□ -0.44
CKS1BP61024 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
CKS1BP61024 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 AC108860.2-201ENST00000562760 2183 ntBASIC12.33□□□□□ -0.44
CKS1BP61024 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC12.33□□□□□ -0.44
CKS1BP61024 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 CICP13-201ENST00000422015 2789 ntBASIC12.33□□□□□ -0.44
CKS1BP61024 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.33□□□□□ -0.44
CKS1BP61024 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC12.33□□□□□ -0.44
CKS1BP61024 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC12.33□□□□□ -0.44
CKS1BP61024 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CKS1BP61024 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
CKS1BP61024 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
CKS1BP61024 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms