Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.25■□□□□ 0.51
CDH6P55285 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.25■□□□□ 0.51
CDH6P55285 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.25■□□□□ 0.51
CDH6P55285 AC109462.3-201ENST00000573934 613 ntBASIC18.25■□□□□ 0.51
CDH6P55285 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDH6P55285 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CDH6P55285 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CDH6P55285 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CDH6P55285 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDH6P55285 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.25■□□□□ 0.51
CDH6P55285 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CDH6P55285 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.25■□□□□ 0.51
CDH6P55285 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDH6P55285 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.25■□□□□ 0.51
CDH6P55285 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.25■□□□□ 0.51
CDH6P55285 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.25■□□□□ 0.51
CDH6P55285 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH6P55285 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CDH6P55285 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.24■□□□□ 0.51
CDH6P55285 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.24■□□□□ 0.51
CDH6P55285 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CDH6P55285 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.24■□□□□ 0.51
CDH6P55285 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.24■□□□□ 0.51
CDH6P55285 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CDH6P55285 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CDH6P55285 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.24■□□□□ 0.51
CDH6P55285 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 AP002414.4-201ENST00000589764 1148 ntBASIC18.24■□□□□ 0.51
CDH6P55285 AC069148.1-201ENST00000608741 768 ntBASIC18.24■□□□□ 0.51
CDH6P55285 AC019129.2-201ENST00000609837 1235 ntBASIC18.24■□□□□ 0.51
CDH6P55285 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.24■□□□□ 0.51
CDH6P55285 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.24■□□□□ 0.51
CDH6P55285 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.24■□□□□ 0.51
CDH6P55285 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDH6P55285 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.24■□□□□ 0.51
CDH6P55285 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.23■□□□□ 0.51
CDH6P55285 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.23■□□□□ 0.51
CDH6P55285 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CDH6P55285 AC080080.1-201ENST00000625121 2420 ntBASIC18.23■□□□□ 0.51
CDH6P55285 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CDH6P55285 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.23■□□□□ 0.51
CDH6P55285 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.23■□□□□ 0.51
CDH6P55285 AC233702.3-201ENST00000578656 1387 ntBASIC18.23■□□□□ 0.51
CDH6P55285 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.23■□□□□ 0.51
CDH6P55285 FAM220CP-201ENST00000395253 831 ntBASIC18.23■□□□□ 0.51
CDH6P55285 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.23■□□□□ 0.51
CDH6P55285 AC122714.2-201ENST00000502787 707 ntBASIC18.23■□□□□ 0.51
CDH6P55285 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.23■□□□□ 0.51
CDH6P55285 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.23■□□□□ 0.51
CDH6P55285 TPSP2-201ENST00000561760 610 ntBASIC18.23■□□□□ 0.51
CDH6P55285 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.23■□□□□ 0.51
CDH6P55285 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CDH6P55285 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CDH6P55285 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
CDH6P55285 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.23■□□□□ 0.51
CDH6P55285 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.23■□□□□ 0.51
CDH6P55285 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CDH6P55285 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.23■□□□□ 0.51
CDH6P55285 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.23■□□□□ 0.51
CDH6P55285 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CDH6P55285 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.23■□□□□ 0.51
CDH6P55285 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CDH6P55285 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CDH6P55285 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH6P55285 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDH6P55285 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CDH6P55285 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.22■□□□□ 0.51
CDH6P55285 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH6P55285 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH6P55285 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CDH6P55285 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
CDH6P55285 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDH6P55285 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms