Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.2■□□□□ 0.5
PTPN9P43378 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.2■□□□□ 0.5
PTPN9P43378 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.2■□□□□ 0.5
PTPN9P43378 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.2■□□□□ 0.5
PTPN9P43378 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.2■□□□□ 0.5
PTPN9P43378 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.2■□□□□ 0.5
PTPN9P43378 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN9P43378 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.2■□□□□ 0.5
PTPN9P43378 AP001269.4-201ENST00000609611 512 ntBASIC18.2■□□□□ 0.5
PTPN9P43378 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN9P43378 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN9P43378 SIGLEC16-201ENST00000599858 1437 ntBASIC18.2■□□□□ 0.5
PTPN9P43378 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN9P43378 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.2■□□□□ 0.5
PTPN9P43378 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN9P43378 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.2■□□□□ 0.5
PTPN9P43378 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN9P43378 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
PTPN9P43378 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
PTPN9P43378 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN9P43378 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN9P43378 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.19■□□□□ 0.5
PTPN9P43378 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN9P43378 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN9P43378 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN9P43378 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN9P43378 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN9P43378 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN9P43378 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.19■□□□□ 0.5
PTPN9P43378 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
PTPN9P43378 AP005117.1-201ENST00000584346 1413 ntBASIC18.19■□□□□ 0.5
PTPN9P43378 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.19■□□□□ 0.5
PTPN9P43378 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.19■□□□□ 0.5
PTPN9P43378 CLEC4GP1-201ENST00000596555 870 ntBASIC18.19■□□□□ 0.5
PTPN9P43378 AL732292.2-201ENST00000609649 430 ntBASIC18.19■□□□□ 0.5
PTPN9P43378 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN9P43378 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTPN9P43378 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.19■□□□□ 0.5
PTPN9P43378 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
PTPN9P43378 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.18■□□□□ 0.5
PTPN9P43378 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
PTPN9P43378 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTPN9P43378 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTPN9P43378 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
PTPN9P43378 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
PTPN9P43378 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PTPN9P43378 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PTPN9P43378 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.18■□□□□ 0.5
PTPN9P43378 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTPN9P43378 SLC25A1P3-201ENST00000395415 828 ntBASIC18.18■□□□□ 0.5
PTPN9P43378 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.18■□□□□ 0.5
PTPN9P43378 AL020989.1-201ENST00000422979 469 ntBASIC18.18■□□□□ 0.5
PTPN9P43378 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.18■□□□□ 0.5
PTPN9P43378 KRT18P56-201ENST00000507275 550 ntBASIC18.18■□□□□ 0.5
PTPN9P43378 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.18■□□□□ 0.5
PTPN9P43378 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
PTPN9P43378 AC079776.2-201ENST00000641154 1609 ntBASIC18.18■□□□□ 0.5
PTPN9P43378 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTPN9P43378 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTPN9P43378 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTPN9P43378 FZD10-202ENST00000539839 3282 ntBASIC18.18■□□□□ 0.5
PTPN9P43378 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
PTPN9P43378 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
PTPN9P43378 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
PTPN9P43378 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.18■□□□□ 0.5
PTPN9P43378 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTPN9P43378 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
PTPN9P43378 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PTPN9P43378 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
PTPN9P43378 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.17■□□□□ 0.5
PTPN9P43378 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.17■□□□□ 0.5
PTPN9P43378 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.17■□□□□ 0.5
PTPN9P43378 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 RBM17P3-201ENST00000417687 1192 ntBASIC18.17■□□□□ 0.5
PTPN9P43378 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
PTPN9P43378 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.17■□□□□ 0.5
PTPN9P43378 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.17■□□□□ 0.5
PTPN9P43378 AC091304.2-201ENST00000564639 760 ntBASIC18.17■□□□□ 0.5
PTPN9P43378 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.17■□□□□ 0.5
PTPN9P43378 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
PTPN9P43378 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.17■□□□□ 0.5
PTPN9P43378 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTPN9P43378 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.17■□□□□ 0.5
PTPN9P43378 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTPN9P43378 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms