Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 HLA-DQB1-201ENST00000374943 1656 ntBASIC13.32□□□□□ -0.28
AP1S3Q96PC3 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 MAP2K4P1-201ENST00000438453 1195 ntBASIC13.32□□□□□ -0.28
AP1S3Q96PC3 AC091390.4-202ENST00000476426 537 ntBASIC13.32□□□□□ -0.28
AP1S3Q96PC3 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 AC026271.3-201ENST00000571884 352 ntBASIC13.32□□□□□ -0.28
AP1S3Q96PC3 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 AC067750.1-201ENST00000608826 6545 ntBASIC13.32□□□□□ -0.28
AP1S3Q96PC3 PCDHA3-202ENST00000532566 4594 ntBASIC13.32□□□□□ -0.28
AP1S3Q96PC3 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
AP1S3Q96PC3 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 FAM120C-202ENST00000375180 8057 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 GAS7-202ENST00000396115 929 ntTSL 5 BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 CKBP1-201ENST00000565489 1086 ntBASIC13.31□□□□□ -0.28
AP1S3Q96PC3 GXYLT1P5-201ENST00000614548 1189 ntBASIC13.31□□□□□ -0.28
AP1S3Q96PC3 GAMT-205ENST00000640762 751 ntTSL 5 BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 AL023875.1-201ENST00000640777 796 ntBASIC13.31□□□□□ -0.28
AP1S3Q96PC3 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 FLJ38576-201ENST00000623820 2459 ntBASIC13.31□□□□□ -0.28
AP1S3Q96PC3 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP1S3Q96PC3 PCDH8P1-201ENST00000428983 2773 ntBASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms