Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 AC254562.1-201ENST00000417586 456 ntBASIC20.51■□□□□ 0.87
TRIM47Q96LD4 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 AL022326.1-202ENST00000641533 845 ntBASIC20.51■□□□□ 0.87
TRIM47Q96LD4 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 AC097374.2-201ENST00000618617 1306 ntBASIC20.51■□□□□ 0.87
TRIM47Q96LD4 MYLKP1-201ENST00000509077 1580 ntBASIC20.51■□□□□ 0.87
TRIM47Q96LD4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
TRIM47Q96LD4 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 FAM8A3P-201ENST00000427218 844 ntBASIC20.5■□□□□ 0.87
TRIM47Q96LD4 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 AC112698.1-201ENST00000510299 916 ntBASIC20.5■□□□□ 0.87
TRIM47Q96LD4 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 AC092865.6-201ENST00000642101 219 ntBASIC20.5■□□□□ 0.87
TRIM47Q96LD4 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 AC005332.8-201ENST00000622750 2735 ntBASIC20.5■□□□□ 0.87
TRIM47Q96LD4 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.5■□□□□ 0.87
TRIM47Q96LD4 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 AC135776.1-201ENST00000319817 2481 ntBASIC20.49■□□□□ 0.87
TRIM47Q96LD4 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 SLC4A1APP2-201ENST00000424054 1259 ntBASIC20.49■□□□□ 0.87
TRIM47Q96LD4 AL645939.2-201ENST00000427340 991 ntBASIC20.49■□□□□ 0.87
TRIM47Q96LD4 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 AC006557.2-201ENST00000592985 1240 ntBASIC20.49■□□□□ 0.87
TRIM47Q96LD4 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 PGM5P2-202ENST00000637225 1043 ntBASIC20.49■□□□□ 0.87
TRIM47Q96LD4 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM47Q96LD4 AC026471.1-201ENST00000564629 3026 ntBASIC20.48■□□□□ 0.87
TRIM47Q96LD4 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
TRIM47Q96LD4 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM47Q96LD4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.48■□□□□ 0.87
TRIM47Q96LD4 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
TRIM47Q96LD4 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM47Q96LD4 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.48■□□□□ 0.87
TRIM47Q96LD4 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM47Q96LD4 CALY-203ENST00000368558 825 ntTSL 5 BASIC20.48■□□□□ 0.87
TRIM47Q96LD4 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.48■□□□□ 0.87
TRIM47Q96LD4 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC20.48■□□□□ 0.87
TRIM47Q96LD4 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC20.48■□□□□ 0.87
TRIM47Q96LD4 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM47Q96LD4 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms