Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
NEK3P51956 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.11■□□□□ 0.49
NEK3P51956 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
NEK3P51956 AC022211.2-201ENST00000585075 2527 ntBASIC18.11■□□□□ 0.49
NEK3P51956 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
NEK3P51956 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
NEK3P51956 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
NEK3P51956 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.11■□□□□ 0.49
NEK3P51956 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.11■□□□□ 0.49
NEK3P51956 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.11■□□□□ 0.49
NEK3P51956 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.11■□□□□ 0.49
NEK3P51956 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.11■□□□□ 0.49
NEK3P51956 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.11■□□□□ 0.49
NEK3P51956 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.11■□□□□ 0.49
NEK3P51956 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.11■□□□□ 0.49
NEK3P51956 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.11■□□□□ 0.49
NEK3P51956 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
NEK3P51956 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
NEK3P51956 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
NEK3P51956 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 AP001094.4-201ENST00000579008 2176 ntBASIC18.11■□□□□ 0.49
NEK3P51956 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.11■□□□□ 0.49
NEK3P51956 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NEK3P51956 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
NEK3P51956 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
NEK3P51956 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.1■□□□□ 0.49
NEK3P51956 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.1■□□□□ 0.49
NEK3P51956 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.1■□□□□ 0.49
NEK3P51956 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.1■□□□□ 0.49
NEK3P51956 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.1■□□□□ 0.49
NEK3P51956 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
NEK3P51956 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.1■□□□□ 0.49
NEK3P51956 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.1■□□□□ 0.49
NEK3P51956 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 NUS1P2-201ENST00000417358 873 ntBASIC18.1■□□□□ 0.49
NEK3P51956 FAAHP1-202ENST00000446499 1238 ntBASIC18.1■□□□□ 0.49
NEK3P51956 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.1■□□□□ 0.49
NEK3P51956 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.1■□□□□ 0.49
NEK3P51956 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.1■□□□□ 0.49
NEK3P51956 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.1■□□□□ 0.49
NEK3P51956 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.1■□□□□ 0.49
NEK3P51956 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.1■□□□□ 0.49
NEK3P51956 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
NEK3P51956 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NEK3P51956 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
NEK3P51956 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
NEK3P51956 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.09■□□□□ 0.49
NEK3P51956 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.09■□□□□ 0.49
NEK3P51956 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
NEK3P51956 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.09■□□□□ 0.49
NEK3P51956 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
NEK3P51956 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.09■□□□□ 0.49
NEK3P51956 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NEK3P51956 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
NEK3P51956 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.09■□□□□ 0.49
NEK3P51956 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.09■□□□□ 0.49
NEK3P51956 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NEK3P51956 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.09■□□□□ 0.49
NEK3P51956 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.09■□□□□ 0.49
NEK3P51956 POM121L3P-201ENST00000419331 1163 ntBASIC18.09■□□□□ 0.49
NEK3P51956 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
NEK3P51956 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.09■□□□□ 0.49
NEK3P51956 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
NEK3P51956 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.09■□□□□ 0.49
NEK3P51956 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.09■□□□□ 0.49
NEK3P51956 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NEK3P51956 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.09■□□□□ 0.49
NEK3P51956 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms