Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CACNA1FO60840 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
CACNA1FO60840 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CACNA1FO60840 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CACNA1FO60840 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC21.92■■□□□ 1.1
CACNA1FO60840 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC21.92■■□□□ 1.1
CACNA1FO60840 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CACNA1FO60840 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
CACNA1FO60840 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CACNA1FO60840 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CACNA1FO60840 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CACNA1FO60840 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CACNA1FO60840 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CACNA1FO60840 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC21.92■■□□□ 1.1
CACNA1FO60840 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC21.92■■□□□ 1.1
CACNA1FO60840 POLD4-207ENST00000531239 584 ntTSL 2 BASIC21.92■■□□□ 1.1
CACNA1FO60840 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CACNA1FO60840 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CACNA1FO60840 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CACNA1FO60840 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CACNA1FO60840 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CACNA1FO60840 PP12613-201ENST00000424958 2230 ntBASIC21.91■■□□□ 1.1
CACNA1FO60840 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
CACNA1FO60840 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CACNA1FO60840 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CACNA1FO60840 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
CACNA1FO60840 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
CACNA1FO60840 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CACNA1FO60840 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC21.91■■□□□ 1.1
CACNA1FO60840 AC093525.9-201ENST00000624961 1746 ntBASIC21.91■■□□□ 1.1
CACNA1FO60840 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CACNA1FO60840 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC21.91■■□□□ 1.1
CACNA1FO60840 AP000347.1-202ENST00000435868 847 ntBASIC21.91■■□□□ 1.1
CACNA1FO60840 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CACNA1FO60840 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC21.91■■□□□ 1.1
CACNA1FO60840 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
CACNA1FO60840 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.91■■□□□ 1.1
CACNA1FO60840 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC21.91■■□□□ 1.1
CACNA1FO60840 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CACNA1FO60840 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1FO60840 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC21.9■■□□□ 1.1
CACNA1FO60840 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC21.9■■□□□ 1.1
CACNA1FO60840 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC21.9■■□□□ 1.1
CACNA1FO60840 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC21.9■■□□□ 1.1
CACNA1FO60840 AC129492.6-201ENST00000611383 1305 ntBASIC21.9■■□□□ 1.1
CACNA1FO60840 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC21.9■■□□□ 1.1
CACNA1FO60840 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1FO60840 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1FO60840 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1FO60840 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1FO60840 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1FO60840 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
CACNA1FO60840 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1FO60840 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC21.9■■□□□ 1.1
CACNA1FO60840 ATP6V0CP3-201ENST00000417255 467 ntBASIC21.9■■□□□ 1.1
CACNA1FO60840 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC21.9■■□□□ 1.1
CACNA1FO60840 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1FO60840 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC21.9■■□□□ 1.1
CACNA1FO60840 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC21.9■■□□□ 1.1
CACNA1FO60840 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC21.9■■□□□ 1.1
CACNA1FO60840 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC21.9■■□□□ 1.1
CACNA1FO60840 PIN1-206ENST00000587625 878 ntTSL 2 BASIC21.9■■□□□ 1.1
CACNA1FO60840 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
CACNA1FO60840 FAM197Y3-203ENST00000618346 717 ntBASIC21.9■■□□□ 1.1
CACNA1FO60840 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1FO60840 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1FO60840 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1FO60840 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1FO60840 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC21.9■■□□□ 1.1
CACNA1FO60840 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC21.9■■□□□ 1.1
CACNA1FO60840 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
CACNA1FO60840 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.9■■□□□ 1.1
CACNA1FO60840 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1FO60840 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC21.89■■□□□ 1.1
CACNA1FO60840 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
CACNA1FO60840 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
CACNA1FO60840 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
CACNA1FO60840 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
CACNA1FO60840 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
CACNA1FO60840 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
CACNA1FO60840 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
CACNA1FO60840 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
CACNA1FO60840 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CACNA1FO60840 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CACNA1FO60840 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC21.89■■□□□ 1.09
CACNA1FO60840 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
CACNA1FO60840 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC21.89■■□□□ 1.09
CACNA1FO60840 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CACNA1FO60840 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.89■■□□□ 1.09
CACNA1FO60840 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CACNA1FO60840 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
CACNA1FO60840 FRMD8P1-201ENST00000440433 1524 ntBASIC21.89■■□□□ 1.09
CACNA1FO60840 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CACNA1FO60840 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CACNA1FO60840 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC21.89■■□□□ 1.09
CACNA1FO60840 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
CACNA1FO60840 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CACNA1FO60840 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CACNA1FO60840 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC21.88■■□□□ 1.09
CACNA1FO60840 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms