Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 IGHV3-52-201ENST00000519770 353 ntBASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 AL096865.1-201ENST00000606796 927 ntBASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 AC093512.1-201ENST00000617969 520 ntBASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 AL513210.1-201ENST00000629608 234 ntBASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 AL031598.1-201ENST00000561511 1773 ntBASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC15.74■□□□□ 0.11
SNRNP40Q96DI7 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 AC098818.2-201ENST00000564925 2320 ntBASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 AC004461.1-201ENST00000412461 403 ntBASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 LINC00982-205ENST00000420957 435 ntBASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 AC105339.1-204ENST00000636249 355 ntBASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 AC092902.6-201ENST00000641783 218 ntBASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 AC009336.1-201ENST00000608941 1553 ntBASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SNRNP40Q96DI7 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 PI4KAP1-204ENST00000612579 1703 ntBASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 BCRP1-201ENST00000444246 691 ntBASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 COX20P2-201ENST00000452636 358 ntBASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms