Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN3Q8NCR9 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN3Q8NCR9 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.02□□□□□ -0.16
CLRN3Q8NCR9 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
CLRN3Q8NCR9 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN3Q8NCR9 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN3Q8NCR9 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN3Q8NCR9 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN3Q8NCR9 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN3Q8NCR9 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN3Q8NCR9 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN3Q8NCR9 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN3Q8NCR9 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN3Q8NCR9 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
CLRN3Q8NCR9 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 AC019069.1-201ENST00000610008 1333 ntBASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 GUK1-205ENST00000366722 850 ntTSL 3 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CLRN3Q8NCR9 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 AC023908.3-201ENST00000564211 3047 ntBASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 KRT8P32-201ENST00000512863 1461 ntBASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 JTB-203ENST00000368589 1216 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 TSPY23P-201ENST00000440136 739 ntBASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 SP100-208ENST00000427101 1922 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CLRN3Q8NCR9 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms