Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC24.14■■□□□ 1.46
MSH6P52701 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC24.14■■□□□ 1.45
MSH6P52701 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
MSH6P52701 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
MSH6P52701 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
MSH6P52701 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC24.14■■□□□ 1.45
MSH6P52701 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
MSH6P52701 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
MSH6P52701 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC24.14■■□□□ 1.45
MSH6P52701 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC24.14■■□□□ 1.45
MSH6P52701 SRP9-204ENST00000619790 377 ntTSL 2 BASIC24.14■■□□□ 1.45
MSH6P52701 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
MSH6P52701 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC24.14■■□□□ 1.45
MSH6P52701 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC24.13■■□□□ 1.45
MSH6P52701 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
MSH6P52701 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
MSH6P52701 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
MSH6P52701 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
MSH6P52701 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
MSH6P52701 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC24.13■■□□□ 1.45
MSH6P52701 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
MSH6P52701 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC24.13■■□□□ 1.45
MSH6P52701 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
MSH6P52701 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
MSH6P52701 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
MSH6P52701 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
MSH6P52701 PIN1P1-201ENST00000412108 996 ntBASIC24.13■■□□□ 1.45
MSH6P52701 SPCS2P4-201ENST00000436160 681 ntBASIC24.13■■□□□ 1.45
MSH6P52701 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC24.13■■□□□ 1.45
MSH6P52701 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC24.13■■□□□ 1.45
MSH6P52701 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC24.13■■□□□ 1.45
MSH6P52701 INO80E-210ENST00000567705 880 ntTSL 3 BASIC24.13■■□□□ 1.45
MSH6P52701 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
MSH6P52701 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
MSH6P52701 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
MSH6P52701 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
MSH6P52701 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
MSH6P52701 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC24.13■■□□□ 1.45
MSH6P52701 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
MSH6P52701 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
MSH6P52701 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC24.12■■□□□ 1.45
MSH6P52701 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC24.12■■□□□ 1.45
MSH6P52701 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
MSH6P52701 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
MSH6P52701 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
MSH6P52701 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
MSH6P52701 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC24.12■■□□□ 1.45
MSH6P52701 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
MSH6P52701 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC24.12■■□□□ 1.45
MSH6P52701 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
MSH6P52701 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC24.12■■□□□ 1.45
MSH6P52701 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC24.12■■□□□ 1.45
MSH6P52701 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC24.12■■□□□ 1.45
MSH6P52701 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC24.12■■□□□ 1.45
MSH6P52701 AC097493.3-201ENST00000509725 367 ntBASIC24.12■■□□□ 1.45
MSH6P52701 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC24.12■■□□□ 1.45
MSH6P52701 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC24.12■■□□□ 1.45
MSH6P52701 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC24.12■■□□□ 1.45
MSH6P52701 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC24.12■■□□□ 1.45
MSH6P52701 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
MSH6P52701 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
MSH6P52701 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC24.12■■□□□ 1.45
MSH6P52701 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
MSH6P52701 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
MSH6P52701 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
MSH6P52701 TDG-209ENST00000544861 1387 ntTSL 2 BASIC24.11■■□□□ 1.45
MSH6P52701 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
MSH6P52701 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
MSH6P52701 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
MSH6P52701 ARSEP1-201ENST00000420443 635 ntBASIC24.11■■□□□ 1.45
MSH6P52701 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC24.11■■□□□ 1.45
MSH6P52701 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
MSH6P52701 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
MSH6P52701 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC24.11■■□□□ 1.45
MSH6P52701 AL645728.2-201ENST00000641974 660 ntBASIC24.11■■□□□ 1.45
MSH6P52701 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC24.11■■□□□ 1.45
MSH6P52701 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
MSH6P52701 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC24.11■■□□□ 1.45
MSH6P52701 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
MSH6P52701 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
MSH6P52701 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
MSH6P52701 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
MSH6P52701 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
MSH6P52701 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC24.1■■□□□ 1.45
MSH6P52701 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
MSH6P52701 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
MSH6P52701 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
MSH6P52701 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
MSH6P52701 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
MSH6P52701 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
MSH6P52701 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC24.1■■□□□ 1.45
MSH6P52701 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
MSH6P52701 THTPA-204ENST00000554970 569 ntTSL 4 BASIC24.1■■□□□ 1.45
MSH6P52701 THTPA-206ENST00000556015 535 ntTSL 3 BASIC24.1■■□□□ 1.45
MSH6P52701 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC24.1■■□□□ 1.45
MSH6P52701 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC24.1■■□□□ 1.45
MSH6P52701 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
MSH6P52701 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
MSH6P52701 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC24.1■■□□□ 1.45
MSH6P52701 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC24.1■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms