Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 AC090164.3-201ENST00000610780 2143 ntBASIC17.12■□□□□ 0.33
LMX1AQ8TE12 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 AC004408.2-201ENST00000623613 2777 ntBASIC17.11■□□□□ 0.33
LMX1AQ8TE12 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 CRYGEP-201ENST00000412192 528 ntBASIC17.11■□□□□ 0.33
LMX1AQ8TE12 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 AC092183.1-201ENST00000469884 875 ntBASIC17.11■□□□□ 0.33
LMX1AQ8TE12 AC112482.1-201ENST00000492080 688 ntBASIC17.11■□□□□ 0.33
LMX1AQ8TE12 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 AC097637.2-201ENST00000624096 1997 ntBASIC17.11■□□□□ 0.33
LMX1AQ8TE12 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1AQ8TE12 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 RPS8P6-201ENST00000426177 609 ntBASIC17.1■□□□□ 0.33
LMX1AQ8TE12 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 KRT18P2-201ENST00000447938 1258 ntBASIC17.1■□□□□ 0.33
LMX1AQ8TE12 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 AC108073.2-201ENST00000464002 357 ntBASIC17.1■□□□□ 0.33
LMX1AQ8TE12 RPS15P9-201ENST00000494093 319 ntBASIC17.1■□□□□ 0.33
LMX1AQ8TE12 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1AQ8TE12 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 AC004832.2-201ENST00000426397 482 ntBASIC17.09■□□□□ 0.33
LMX1AQ8TE12 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.09■□□□□ 0.33
LMX1AQ8TE12 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms