Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 AC123595.1-201ENST00000440769 1046 ntBASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 LGR4-203ENST00000480977 492 ntTSL 2 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 LINC02228-203ENST00000641970 1355 ntBASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 GOLGA6L3-201ENST00000507199 1679 ntBASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN3Q8NCR9 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 SNCG-201ENST00000348795 684 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 BRWD1-AS2-201ENST00000603064 1028 ntBASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 AC105020.6-201ENST00000621523 1217 ntBASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 AC126755.1-201ENST00000525846 6405 ntBASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 AC022532.1-201ENST00000624563 1728 ntBASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN3Q8NCR9 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms