Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC20.7■□□□□ 0.9
HLA-DOAP06340 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.7■□□□□ 0.9
HLA-DOAP06340 TCAP-202ENST00000578283 583 ntTSL 5 BASIC20.7■□□□□ 0.9
HLA-DOAP06340 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DOAP06340 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
HLA-DOAP06340 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.7■□□□□ 0.9
HLA-DOAP06340 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DOAP06340 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
HLA-DOAP06340 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DOAP06340 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DOAP06340 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.7■□□□□ 0.9
HLA-DOAP06340 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC20.7■□□□□ 0.9
HLA-DOAP06340 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC20.7■□□□□ 0.9
HLA-DOAP06340 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-DOAP06340 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-DOAP06340 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-DOAP06340 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 ABALON-201ENST00000629058 1903 ntBASIC20.69■□□□□ 0.9
HLA-DOAP06340 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-DOAP06340 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-DOAP06340 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 RPS15P9-201ENST00000494093 319 ntBASIC20.69■□□□□ 0.9
HLA-DOAP06340 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 AC064836.3-201ENST00000607928 673 ntBASIC20.69■□□□□ 0.9
HLA-DOAP06340 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-DOAP06340 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-DOAP06340 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HLA-DOAP06340 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-DOAP06340 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-DOAP06340 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.68■□□□□ 0.9
HLA-DOAP06340 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-DOAP06340 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-DOAP06340 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
HLA-DOAP06340 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-DOAP06340 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-DOAP06340 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-DOAP06340 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.68■□□□□ 0.9
HLA-DOAP06340 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-DOAP06340 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
HLA-DOAP06340 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-DOAP06340 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.68■□□□□ 0.9
HLA-DOAP06340 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC20.68■□□□□ 0.9
HLA-DOAP06340 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC20.68■□□□□ 0.9
HLA-DOAP06340 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.68■□□□□ 0.9
HLA-DOAP06340 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-DOAP06340 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-DOAP06340 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
HLA-DOAP06340 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
HLA-DOAP06340 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-DOAP06340 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-DOAP06340 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.68■□□□□ 0.9
HLA-DOAP06340 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-DOAP06340 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.67■□□□□ 0.9
HLA-DOAP06340 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DOAP06340 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DOAP06340 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DOAP06340 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DOAP06340 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DOAP06340 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DOAP06340 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DOAP06340 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DOAP06340 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 AC108073.2-201ENST00000464002 357 ntBASIC20.67■□□□□ 0.9
HLA-DOAP06340 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 IGHV3-65-201ENST00000523210 341 ntBASIC20.67■□□□□ 0.9
HLA-DOAP06340 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DOAP06340 MIR4751-201ENST00000578027 74 ntBASIC20.67■□□□□ 0.9
HLA-DOAP06340 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 AC008667.4-201ENST00000607370 168 ntBASIC20.67■□□□□ 0.9
HLA-DOAP06340 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DOAP06340 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DOAP06340 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DOAP06340 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
HLA-DOAP06340 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms