Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 AC064862.7-201ENST00000604520 867 ntBASIC18.4■□□□□ 0.54
USP3Q9Y6I4 AC148477.8-201ENST00000624298 468 ntBASIC18.4■□□□□ 0.54
USP3Q9Y6I4 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP3Q9Y6I4 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
USP3Q9Y6I4 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.39■□□□□ 0.54
USP3Q9Y6I4 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 AC025062.2-201ENST00000605477 670 ntBASIC18.39■□□□□ 0.53
USP3Q9Y6I4 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP3Q9Y6I4 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 HLA-J-201ENST00000462773 1622 ntBASIC18.38■□□□□ 0.53
USP3Q9Y6I4 AC148477.5-201ENST00000625164 1645 ntBASIC18.38■□□□□ 0.53
USP3Q9Y6I4 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 KLF4P1-201ENST00000412782 1185 ntBASIC18.38■□□□□ 0.53
USP3Q9Y6I4 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 HNRNPDP1-201ENST00000439535 754 ntBASIC18.38■□□□□ 0.53
USP3Q9Y6I4 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 AF186996.4-201ENST00000467186 377 ntBASIC18.38■□□□□ 0.53
USP3Q9Y6I4 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 AC073648.2-201ENST00000510116 352 ntBASIC18.38■□□□□ 0.53
USP3Q9Y6I4 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 AL022326.1-202ENST00000641533 845 ntBASIC18.38■□□□□ 0.53
USP3Q9Y6I4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 HLA-A-201ENST00000376802 1334 ntBASIC18.38■□□□□ 0.53
USP3Q9Y6I4 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 AC009336.1-201ENST00000608941 1553 ntBASIC18.38■□□□□ 0.53
USP3Q9Y6I4 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP3Q9Y6I4 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms