Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 AC008687.5-201ENST00000593746 558 ntBASIC17.12■□□□□ 0.33
NDE1Q9NXR1 AP000692.2-201ENST00000608391 879 ntBASIC17.12■□□□□ 0.33
NDE1Q9NXR1 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NDE1Q9NXR1 MIR6786-201ENST00000616843 113 ntBASIC17.12■□□□□ 0.33
NDE1Q9NXR1 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.12■□□□□ 0.33
NDE1Q9NXR1 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
NDE1Q9NXR1 PCDHB17P-201ENST00000539533 2393 ntBASIC17.12■□□□□ 0.33
NDE1Q9NXR1 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NDE1Q9NXR1 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NDE1Q9NXR1 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NDE1Q9NXR1 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NDE1Q9NXR1 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
NDE1Q9NXR1 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
NDE1Q9NXR1 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.12■□□□□ 0.33
NDE1Q9NXR1 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.12■□□□□ 0.33
NDE1Q9NXR1 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 B3GAT3P1-201ENST00000471720 806 ntBASIC17.11■□□□□ 0.33
NDE1Q9NXR1 CA15P1-201ENST00000481698 905 ntBASIC17.11■□□□□ 0.33
NDE1Q9NXR1 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 CR392000.1-201ENST00000624770 1228 ntBASIC17.11■□□□□ 0.33
NDE1Q9NXR1 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 LINC00554-201ENST00000564841 3011 ntBASIC17.11■□□□□ 0.33
NDE1Q9NXR1 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.11■□□□□ 0.33
NDE1Q9NXR1 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 AC132938.6-201ENST00000623828 1655 ntBASIC17.1■□□□□ 0.33
NDE1Q9NXR1 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 AC124016.1-201ENST00000609552 612 ntBASIC17.1■□□□□ 0.33
NDE1Q9NXR1 IKBKGP1-201ENST00000612193 1073 ntBASIC17.1■□□□□ 0.33
NDE1Q9NXR1 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 AC096733.2-201ENST00000609937 1394 ntBASIC17.1■□□□□ 0.33
NDE1Q9NXR1 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.1■□□□□ 0.33
NDE1Q9NXR1 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms