Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
RTL3Q8N8U3 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
RTL3Q8N8U3 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 IGHV3-52-201ENST00000519770 353 ntBASIC18.08■□□□□ 0.48
RTL3Q8N8U3 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 LINC00896-202ENST00000609602 2128 ntBASIC18.08■□□□□ 0.48
RTL3Q8N8U3 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.08■□□□□ 0.48
RTL3Q8N8U3 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 AC111152.3-201ENST00000569699 673 ntBASIC18.07■□□□□ 0.48
RTL3Q8N8U3 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RTL3Q8N8U3 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 MYCLP1-201ENST00000372451 1075 ntBASIC18.06■□□□□ 0.48
RTL3Q8N8U3 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 ABCD1P5-201ENST00000445663 754 ntBASIC18.06■□□□□ 0.48
RTL3Q8N8U3 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 AC132008.2-207ENST00000454517 770 ntBASIC18.06■□□□□ 0.48
RTL3Q8N8U3 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.06■□□□□ 0.48
RTL3Q8N8U3 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
RTL3Q8N8U3 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.05■□□□□ 0.48
RTL3Q8N8U3 AP000867.4-201ENST00000641616 219 ntBASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms