Protein–RNA interactions for Protein: P78426

NKX6-1, Homeobox protein Nkx-6.1, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-1P78426 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.56■□□□□ 0.08
NKX6-1P78426 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.56■□□□□ 0.08
NKX6-1P78426 AC106730.1-201ENST00000566722 1090 ntBASIC15.56■□□□□ 0.08
NKX6-1P78426 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.56■□□□□ 0.08
NKX6-1P78426 AL591684.3-201ENST00000605187 298 ntBASIC15.56■□□□□ 0.08
NKX6-1P78426 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX6-1P78426 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX6-1P78426 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC15.56■□□□□ 0.08
NKX6-1P78426 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC15.56■□□□□ 0.08
NKX6-1P78426 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NKX6-1P78426 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC15.56■□□□□ 0.08
NKX6-1P78426 PHGDH-209ENST00000641074 1780 ntBASIC15.56■□□□□ 0.08
NKX6-1P78426 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX6-1P78426 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
NKX6-1P78426 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX6-1P78426 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC15.56■□□□□ 0.08
NKX6-1P78426 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NKX6-1P78426 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX6-1P78426 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
NKX6-1P78426 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC15.56■□□□□ 0.08
NKX6-1P78426 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC15.56■□□□□ 0.08
NKX6-1P78426 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
NKX6-1P78426 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC15.55■□□□□ 0.08
NKX6-1P78426 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
NKX6-1P78426 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC15.55■□□□□ 0.08
NKX6-1P78426 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC15.55■□□□□ 0.08
NKX6-1P78426 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
NKX6-1P78426 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC15.55■□□□□ 0.08
NKX6-1P78426 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC15.55■□□□□ 0.08
NKX6-1P78426 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 KRT18P65-201ENST00000439811 1286 ntBASIC15.55■□□□□ 0.08
NKX6-1P78426 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.55■□□□□ 0.08
NKX6-1P78426 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.55■□□□□ 0.08
NKX6-1P78426 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC15.55■□□□□ 0.08
NKX6-1P78426 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
NKX6-1P78426 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC15.55■□□□□ 0.08
NKX6-1P78426 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC15.55■□□□□ 0.08
NKX6-1P78426 AP005901.3-202ENST00000581653 237 ntBASIC15.55■□□□□ 0.08
NKX6-1P78426 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX6-1P78426 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX6-1P78426 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC15.54■□□□□ 0.08
NKX6-1P78426 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX6-1P78426 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
NKX6-1P78426 AC093010.1-201ENST00000473625 1624 ntBASIC15.54■□□□□ 0.08
NKX6-1P78426 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX6-1P78426 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX6-1P78426 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC15.54■□□□□ 0.08
NKX6-1P78426 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NKX6-1P78426 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX6-1P78426 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.54■□□□□ 0.08
NKX6-1P78426 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX6-1P78426 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC15.54■□□□□ 0.08
NKX6-1P78426 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX6-1P78426 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NKX6-1P78426 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.54■□□□□ 0.08
NKX6-1P78426 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC15.54■□□□□ 0.08
NKX6-1P78426 AC068472.1-201ENST00000474589 881 ntBASIC15.54■□□□□ 0.08
NKX6-1P78426 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC15.54■□□□□ 0.08
NKX6-1P78426 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NKX6-1P78426 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
NKX6-1P78426 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC15.54■□□□□ 0.08
NKX6-1P78426 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NKX6-1P78426 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
NKX6-1P78426 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.54■□□□□ 0.08
NKX6-1P78426 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX6-1P78426 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX6-1P78426 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
NKX6-1P78426 AC132938.6-201ENST00000623828 1655 ntBASIC15.54■□□□□ 0.08
NKX6-1P78426 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX6-1P78426 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX6-1P78426 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX6-1P78426 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC15.53■□□□□ 0.08
NKX6-1P78426 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC15.53■□□□□ 0.08
NKX6-1P78426 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX6-1P78426 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX6-1P78426 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC15.53■□□□□ 0.08
NKX6-1P78426 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC15.53■□□□□ 0.08
NKX6-1P78426 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms