Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
EPHB3P54753 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
EPHB3P54753 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
EPHB3P54753 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.38■□□□□ 0.53
EPHB3P54753 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
EPHB3P54753 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.38■□□□□ 0.53
EPHB3P54753 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.38■□□□□ 0.53
EPHB3P54753 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
EPHB3P54753 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.38■□□□□ 0.53
EPHB3P54753 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.38■□□□□ 0.53
EPHB3P54753 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.38■□□□□ 0.53
EPHB3P54753 AL139424.1-201ENST00000607572 797 ntBASIC18.38■□□□□ 0.53
EPHB3P54753 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
EPHB3P54753 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.38■□□□□ 0.53
EPHB3P54753 AC009336.1-201ENST00000608941 1553 ntBASIC18.38■□□□□ 0.53
EPHB3P54753 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
EPHB3P54753 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.37■□□□□ 0.53
EPHB3P54753 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.37■□□□□ 0.53
EPHB3P54753 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EPHB3P54753 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EPHB3P54753 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
EPHB3P54753 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.37■□□□□ 0.53
EPHB3P54753 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.37■□□□□ 0.53
EPHB3P54753 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EPHB3P54753 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
EPHB3P54753 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.37■□□□□ 0.53
EPHB3P54753 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EPHB3P54753 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
EPHB3P54753 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EPHB3P54753 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.37■□□□□ 0.53
EPHB3P54753 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.37■□□□□ 0.53
EPHB3P54753 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
EPHB3P54753 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.37■□□□□ 0.53
EPHB3P54753 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.37■□□□□ 0.53
EPHB3P54753 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.37■□□□□ 0.53
EPHB3P54753 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.37■□□□□ 0.53
EPHB3P54753 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.37■□□□□ 0.53
EPHB3P54753 MIR3687-2-201ENST00000577708 61 ntBASIC18.37■□□□□ 0.53
EPHB3P54753 MIR3687-1-201ENST00000614492 61 ntBASIC18.37■□□□□ 0.53
EPHB3P54753 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.37■□□□□ 0.53
EPHB3P54753 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
EPHB3P54753 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EPHB3P54753 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.37■□□□□ 0.53
EPHB3P54753 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
EPHB3P54753 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.37■□□□□ 0.53
EPHB3P54753 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EPHB3P54753 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EPHB3P54753 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.37■□□□□ 0.53
EPHB3P54753 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EPHB3P54753 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
EPHB3P54753 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.37■□□□□ 0.53
EPHB3P54753 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EPHB3P54753 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.37■□□□□ 0.53
EPHB3P54753 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
EPHB3P54753 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.37■□□□□ 0.53
EPHB3P54753 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
EPHB3P54753 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
EPHB3P54753 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
EPHB3P54753 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
EPHB3P54753 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
EPHB3P54753 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
EPHB3P54753 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
EPHB3P54753 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
EPHB3P54753 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
EPHB3P54753 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.36■□□□□ 0.53
EPHB3P54753 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
EPHB3P54753 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.36■□□□□ 0.53
EPHB3P54753 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
EPHB3P54753 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
EPHB3P54753 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
EPHB3P54753 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.36■□□□□ 0.53
EPHB3P54753 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.36■□□□□ 0.53
EPHB3P54753 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
EPHB3P54753 DNAJB3-201ENST00000446806 729 ntBASIC18.36■□□□□ 0.53
EPHB3P54753 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.36■□□□□ 0.53
EPHB3P54753 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
EPHB3P54753 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
EPHB3P54753 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.36■□□□□ 0.53
EPHB3P54753 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
EPHB3P54753 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.36■□□□□ 0.53
EPHB3P54753 AC064836.3-201ENST00000607928 673 ntBASIC18.36■□□□□ 0.53
EPHB3P54753 AC097637.2-201ENST00000624096 1997 ntBASIC18.36■□□□□ 0.53
EPHB3P54753 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.36■□□□□ 0.53
EPHB3P54753 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.36■□□□□ 0.53
EPHB3P54753 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
EPHB3P54753 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
EPHB3P54753 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
EPHB3P54753 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
EPHB3P54753 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
EPHB3P54753 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
EPHB3P54753 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
EPHB3P54753 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
EPHB3P54753 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
EPHB3P54753 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
EPHB3P54753 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
EPHB3P54753 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
EPHB3P54753 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
EPHB3P54753 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
EPHB3P54753 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.35■□□□□ 0.53
EPHB3P54753 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms